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Sample GSM459869 Query DataSets for GSM459869
Status Public on Oct 01, 2013
Title KO_cycling_rep3
Sample type RNA
 
Source name KO MEF cycling cells
Organism Mus musculus
Characteristics cell type: mouse embryonic fibroblasts (MEF)
phase: cycling
Treatment protocol NA
Growth protocol NA
Extracted molecule total RNA
Extraction protocol RNA was extracted with Ambion mirVana, in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol, with Illumina iScan System.
Description 4655400089_B
Data processing The data were normalised using quantile normalisation with BeadStudio 3.0
 
Submission date Oct 07, 2009
Last update date Oct 01, 2013
Contact name Riccardo Lorenzo Rossi
E-mail(s) rossi@ingm.it
URL http://www.ingm.it
Organization name Fondazione INGM
Department Integrative Biology
Lab Pagani
Street address Via Trivulzio 10
City Milano
State/province MI
ZIP/Postal code 20149
Country Italy
 
Platform ID GPL6885
Series (1)
GSE18463 The effects of Hmgb1 depletion on gene expression in murine cells

Data table header descriptions
ID_REF
VALUE quantile normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 2107.086 0
ILMN_2721178 380.6616 0
ILMN_3033922 947.5991 0
ILMN_3092673 5050.127 0
ILMN_2816356 115.1558 0.112782
ILMN_2808939 1054.481 0
ILMN_2634564 892.4946 0
ILMN_2737647 107.5861 0.2694235
ILMN_2734484 651.1599 0
ILMN_2952292 199.2569 0
ILMN_2699078 90.88316 0.9223058
ILMN_1213681 188.9832 0
ILMN_2735413 90.59075 0.9273183
ILMN_2735415 101.8125 0.4711779
ILMN_2891688 919.0175 0
ILMN_2637698 2745.009 0
ILMN_2674228 238.4997 0
ILMN_2601546 95.8072 0.7343358
ILMN_1230831 118.888 0.07393484
ILMN_2848071 108.1524 0.2518797

Total number of rows: 25697

Table truncated, full table size 722 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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