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Sample GSM459870 Query DataSets for GSM459870
Status Public on Oct 01, 2013
Title KO_cycling_rep1
Sample type RNA
 
Source name KO MEF cycling cells
Organism Mus musculus
Characteristics cell type: mouse embryonic fibroblasts (MEF)
phase: cycling
Treatment protocol NA
Growth protocol NA
Extracted molecule total RNA
Extraction protocol RNA was extracted with Ambion mirVana, in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol, with Illumina iScan System.
Description 4655400089_D
Data processing The data were normalised using quantile normalisation with BeadStudio 3.0
 
Submission date Oct 07, 2009
Last update date Oct 01, 2013
Contact name Riccardo Lorenzo Rossi
E-mail(s) rossi@ingm.it
URL http://www.ingm.it
Organization name Fondazione INGM
Department Integrative Biology
Lab Pagani
Street address Via Trivulzio 10
City Milano
State/province MI
ZIP/Postal code 20149
Country Italy
 
Platform ID GPL6885
Series (1)
GSE18463 The effects of Hmgb1 depletion on gene expression in murine cells

Data table header descriptions
ID_REF
VALUE quantile normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 1800.468 0
ILMN_2721178 349.2857 0
ILMN_3033922 982.7037 0
ILMN_3092673 4754.557 0
ILMN_2816356 117.7332 0.06766918
ILMN_2808939 1255.677 0
ILMN_2634564 1131.994 0
ILMN_2737647 96.65069 0.6817043
ILMN_2734484 571.1263 0
ILMN_2952292 188.0982 0
ILMN_2699078 111.6284 0.1453634
ILMN_1213681 195.1212 0
ILMN_2735413 121.8062 0.02882206
ILMN_2735415 115.9072 0.08646616
ILMN_2891688 759.9562 0
ILMN_2637698 2530.8 0
ILMN_2674228 220.113 0
ILMN_2601546 100.2381 0.5313283
ILMN_1230831 97.2923 0.6441103
ILMN_2848071 120.32 0.03884712

Total number of rows: 25697

Table truncated, full table size 718 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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