NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM459871 Query DataSets for GSM459871
Status Public on Oct 01, 2013
Title KO_cycling_rep2
Sample type RNA
 
Source name KO MEF cycling cells
Organism Mus musculus
Characteristics cell type: mouse embryonic fibroblasts (MEF)
phase: cycling
Treatment protocol NA
Growth protocol NA
Extracted molecule total RNA
Extraction protocol RNA was extracted with Ambion mirVana, in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol, with Illumina iScan System.
Description 4655400089_F
Data processing The data were normalised using quantile normalisation with BeadStudio 3.0
 
Submission date Oct 07, 2009
Last update date Oct 01, 2013
Contact name Riccardo Lorenzo Rossi
E-mail(s) rossi@ingm.it
URL http://www.ingm.it
Organization name Fondazione INGM
Department Integrative Biology
Lab Pagani
Street address Via Trivulzio 10
City Milano
State/province MI
ZIP/Postal code 20149
Country Italy
 
Platform ID GPL6885
Series (1)
GSE18463 The effects of Hmgb1 depletion on gene expression in murine cells

Data table header descriptions
ID_REF
VALUE quantile normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 1839.67 0
ILMN_2721178 388.0902 0
ILMN_3033922 1031.293 0
ILMN_3092673 4799.235 0
ILMN_2816356 133.1707 0.00877193
ILMN_2808939 997.1839 0
ILMN_2634564 961.3291 0
ILMN_2737647 104.4666 0.3796993
ILMN_2734484 558.1971 0
ILMN_2952292 201.658 0
ILMN_2699078 87.46751 0.9774436
ILMN_1213681 251.2212 0
ILMN_2735413 104.6511 0.3721805
ILMN_2735415 109.3265 0.2230576
ILMN_2891688 839.4511 0
ILMN_2637698 2668.765 0
ILMN_2674228 273.1414 0
ILMN_2601546 103.6033 0.4097744
ILMN_1230831 97.19266 0.6578947
ILMN_2848071 98.67122 0.60401

Total number of rows: 25697

Table truncated, full table size 723 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap