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Sample GSM459874 Query DataSets for GSM459874
Status Public on Oct 01, 2013
Title Wt_G1_rep2
Sample type RNA
Source name Wt MEF G1-phase synchronized cells
Organism Mus musculus
Characteristics cell type: mouse embryonic fibroblasts (MEF)
phase: G1
Treatment protocol NA
Growth protocol NA
Extracted molecule total RNA
Extraction protocol RNA was extracted with Ambion mirVana, in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol, with Illumina iScan System.
Description 4655400096_C
Data processing The data were normalised using quantile normalisation with BeadStudio 3.0
Submission date Oct 07, 2009
Last update date Oct 01, 2013
Contact name Riccardo Lorenzo Rossi
Organization name Fondazione INGM
Department Integrative Biology
Lab Pagani
Street address Via Trivulzio 10
City Milano
State/province MI
ZIP/Postal code 20149
Country Italy
Platform ID GPL6885
Series (1)
GSE18463 The effects of Hmgb1 depletion on gene expression in murine cells

Data table header descriptions
VALUE quantile normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 2346.78 0
ILMN_2721178 563.4937 0
ILMN_3033922 1250.383 0
ILMN_3092673 5198.264 0
ILMN_2816356 125.8508 0.01253133
ILMN_2808939 1221.889 0
ILMN_2634564 890.8424 0
ILMN_2737647 96.97433 0.6654136
ILMN_2734484 314.3788 0
ILMN_2952292 240.1355 0
ILMN_2699078 99.76349 0.5213032
ILMN_1213681 211.0288 0
ILMN_2735413 102.5684 0.3859649
ILMN_2735415 96.57552 0.6854637
ILMN_2891688 633.1675 0
ILMN_2637698 2852.704 0
ILMN_2674228 294.5051 0
ILMN_2601546 118.9166 0.03759398
ILMN_1230831 97.47969 0.6378446
ILMN_2848071 105.6682 0.2756892

Total number of rows: 25697

Table truncated, full table size 721 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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