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Sample GSM459875 Query DataSets for GSM459875
Status Public on Oct 01, 2013
Title KO_G1_rep1
Sample type RNA
 
Source name KO MEF G1-phase synchronized cells
Organism Mus musculus
Characteristics cell type: mouse embryonic fibroblasts (MEF)
phase: G1
Treatment protocol NA
Growth protocol NA
Extracted molecule total RNA
Extraction protocol RNA was extracted with Ambion mirVana, in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol, with Illumina iScan System.
Description 4655400096_B
Data processing The data were normalised using quantile normalisation with BeadStudio 3.0
 
Submission date Oct 07, 2009
Last update date Oct 01, 2013
Contact name Riccardo Lorenzo Rossi
E-mail(s) rossi@ingm.it
URL http://www.ingm.it
Organization name Fondazione INGM
Department Integrative Biology
Lab Pagani
Street address Via Trivulzio 10
City Milano
State/province MI
ZIP/Postal code 20149
Country Italy
 
Platform ID GPL6885
Series (1)
GSE18463 The effects of Hmgb1 depletion on gene expression in murine cells

Data table header descriptions
ID_REF
VALUE quantile normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 786.9895 0
ILMN_2721178 185.6904 0.002506266
ILMN_3033922 518.5939 0
ILMN_3092673 2329.894 0
ILMN_2816356 118.6646 0.08521304
ILMN_2808939 439.1494 0
ILMN_2634564 296.4773 0
ILMN_2737647 97.29591 0.6441103
ILMN_2734484 138.7459 0.02005013
ILMN_2952292 104.3269 0.3621554
ILMN_2699078 113.8982 0.131579
ILMN_1213681 146.569 0.01253133
ILMN_2735413 112.343 0.1516291
ILMN_2735415 100.0367 0.5338346
ILMN_2891688 184.4172 0.002506266
ILMN_2637698 8017.09 0
ILMN_2674228 132.7916 0.03383459
ILMN_2601546 111.473 0.1629073
ILMN_1230831 88.63294 0.9498747
ILMN_2848071 128.6212 0.04135338

Total number of rows: 25697

Table truncated, full table size 740 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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