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Sample GSM459876 Query DataSets for GSM459876
Status Public on Oct 01, 2013
Title KO_G1_rep2
Sample type RNA
 
Source name KO MEF G1-phase synchronized cells
Organism Mus musculus
Characteristics cell type: mouse embryonic fibroblasts (MEF)
phase: G1
Treatment protocol NA
Growth protocol NA
Extracted molecule total RNA
Extraction protocol RNA was extracted with Ambion mirVana, in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol, with Illumina iScan System.
Description 4655400096_D
Data processing The data were normalised using quantile normalisation with BeadStudio 3.0
 
Submission date Oct 07, 2009
Last update date Oct 01, 2013
Contact name Riccardo Lorenzo Rossi
E-mail(s) rossi@ingm.it
URL http://www.ingm.it
Organization name Fondazione INGM
Department Integrative Biology
Lab Pagani
Street address Via Trivulzio 10
City Milano
State/province MI
ZIP/Postal code 20149
Country Italy
 
Platform ID GPL6885
Series (1)
GSE18463 The effects of Hmgb1 depletion on gene expression in murine cells

Data table header descriptions
ID_REF
VALUE quantile normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 1969.026 0
ILMN_2721178 413.1755 0
ILMN_3033922 1331.079 0
ILMN_3092673 5434.636 0
ILMN_2816356 100.3468 0.5413534
ILMN_2808939 1280.245 0
ILMN_2634564 1005.531 0
ILMN_2737647 89.01337 0.9461153
ILMN_2734484 325.7091 0
ILMN_2952292 229.552 0
ILMN_2699078 92.75159 0.8508772
ILMN_1213681 198.7043 0
ILMN_2735413 108.0101 0.2568922
ILMN_2735415 102.5983 0.4536341
ILMN_2891688 558.7529 0
ILMN_2637698 2490.558 0
ILMN_2674228 273.1414 0
ILMN_2601546 103.8778 0.39599
ILMN_1230831 100.8436 0.5200501
ILMN_2848071 119.2193 0.04636591

Total number of rows: 25697

Table truncated, full table size 736 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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