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Sample GSM459877 Query DataSets for GSM459877
Status Public on Oct 01, 2013
Title KO_G1_rep3
Sample type RNA
 
Source name KO MEF G1-phase synchronized cells
Organism Mus musculus
Characteristics cell type: mouse embryonic fibroblasts (MEF)
phase: G1
Treatment protocol NA
Growth protocol NA
Extracted molecule total RNA
Extraction protocol RNA was extracted with Ambion mirVana, in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol, with Illumina iScan System.
Description 4655400089_H
Data processing The data were normalised using quantile normalisation with BeadStudio 3.0
 
Submission date Oct 07, 2009
Last update date Oct 01, 2013
Contact name Riccardo Lorenzo Rossi
E-mail(s) rossi@ingm.it
URL http://www.ingm.it
Organization name Fondazione INGM
Department Integrative Biology
Lab Pagani
Street address Via Trivulzio 10
City Milano
State/province MI
ZIP/Postal code 20149
Country Italy
 
Platform ID GPL6885
Series (1)
GSE18463 The effects of Hmgb1 depletion on gene expression in murine cells

Data table header descriptions
ID_REF
VALUE quantile normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 1853.001 0
ILMN_2721178 363.8015 0
ILMN_3033922 1132.373 0
ILMN_3092673 4848.929 0
ILMN_2816356 111.7192 0.131579
ILMN_2808939 1314.213 0
ILMN_2634564 885.6773 0
ILMN_2737647 106.0681 0.2932331
ILMN_2734484 369.7105 0
ILMN_2952292 203.3482 0
ILMN_2699078 101.0945 0.4824561
ILMN_1213681 167.8746 0
ILMN_2735413 101.8097 0.4573935
ILMN_2735415 97.88789 0.6165413
ILMN_2891688 662.4162 0
ILMN_2637698 2388.582 0
ILMN_2674228 299.2224 0
ILMN_2601546 103.9878 0.368421
ILMN_1230831 97.10212 0.6466165
ILMN_2848071 85.45528 0.991228

Total number of rows: 25697

Table truncated, full table size 725 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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