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Sample GSM459878 Query DataSets for GSM459878
Status Public on Oct 01, 2013
Title Wt_S_rep1
Sample type RNA
 
Source name Wt MEF S-phase synchronized cells
Organism Mus musculus
Characteristics cell type: mouse embryonic fibroblasts (MEF)
phase: S
Treatment protocol NA
Growth protocol NA
Extracted molecule total RNA
Extraction protocol RNA was extracted with Ambion mirVana, in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol, with Illumina iScan System.
Description 4655400096_E
Data processing The data were normalised using quantile normalisation with BeadStudio 3.0
 
Submission date Oct 07, 2009
Last update date Oct 01, 2013
Contact name Riccardo Lorenzo Rossi
E-mail(s) rossi@ingm.it
URL http://www.ingm.it
Organization name Fondazione INGM
Department Integrative Biology
Lab Pagani
Street address Via Trivulzio 10
City Milano
State/province MI
ZIP/Postal code 20149
Country Italy
 
Platform ID GPL6885
Series (1)
GSE18463 The effects of Hmgb1 depletion on gene expression in murine cells

Data table header descriptions
ID_REF
VALUE quantile normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 2054.33 0
ILMN_2721178 319.2114 0
ILMN_3033922 1146.489 0
ILMN_3092673 5535.008 0
ILMN_2816356 124.5931 0.006265664
ILMN_2808939 960.9103 0
ILMN_2634564 598.5269 0
ILMN_2737647 95.79787 0.7105263
ILMN_2734484 566.6351 0
ILMN_2952292 211.1675 0
ILMN_2699078 96.73159 0.641604
ILMN_1213681 211.0288 0
ILMN_2735413 106.8198 0.2205514
ILMN_2735415 107.2666 0.2017544
ILMN_2891688 850.881 0
ILMN_2637698 3414.449 0
ILMN_2674228 292.6108 0
ILMN_2601546 101.7163 0.406015
ILMN_1230831 96.38116 0.6691729
ILMN_2848071 115.5864 0.05137845

Total number of rows: 25697

Table truncated, full table size 714 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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