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Sample GSM459879 Query DataSets for GSM459879
Status Public on Oct 01, 2013
Title Wt_S_rep2
Sample type RNA
 
Source name Wt MEF S-phase synchronized cells
Organism Mus musculus
Characteristics cell type: mouse embryonic fibroblasts (MEF)
phase: S
Treatment protocol NA
Growth protocol NA
Extracted molecule total RNA
Extraction protocol RNA was extracted with Ambion mirVana, in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol, with Illumina iScan System.
Description 4655400096_G
Data processing The data were normalised using quantile normalisation with BeadStudio 3.0
 
Submission date Oct 07, 2009
Last update date Oct 01, 2013
Contact name Riccardo Lorenzo Rossi
E-mail(s) rossi@ingm.it
URL http://www.ingm.it
Organization name Fondazione INGM
Department Integrative Biology
Lab Pagani
Street address Via Trivulzio 10
City Milano
State/province MI
ZIP/Postal code 20149
Country Italy
 
Platform ID GPL6885
Series (1)
GSE18463 The effects of Hmgb1 depletion on gene expression in murine cells

Data table header descriptions
ID_REF
VALUE quantile normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 2202.575 0
ILMN_2721178 345.7477 0
ILMN_3033922 1084.226 0
ILMN_3092673 4971.46 0
ILMN_2816356 126.2813 0.002506266
ILMN_2808939 815.2444 0
ILMN_2634564 544.5543 0
ILMN_2737647 92.39156 0.8458647
ILMN_2734484 587.6465 0
ILMN_2952292 181.6916 0
ILMN_2699078 100.2539 0.4874687
ILMN_1213681 192.46 0
ILMN_2735413 98.06371 0.5889724
ILMN_2735415 111.0767 0.1190476
ILMN_2891688 999.2609 0
ILMN_2637698 3398.735 0
ILMN_2674228 247.7536 0
ILMN_2601546 114.1 0.06766918
ILMN_1230831 110.4349 0.1265664
ILMN_2848071 106.1025 0.2406015

Total number of rows: 25697

Table truncated, full table size 715 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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