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Sample GSM459880 Query DataSets for GSM459880
Status Public on Oct 01, 2013
Title KO_S_rep1
Sample type RNA
 
Source name KO MEF S-phase synchronized cells
Organism Mus musculus
Characteristics cell type: mouse embryonic fibroblasts (MEF)
phase: S
Treatment protocol NA
Growth protocol NA
Extracted molecule total RNA
Extraction protocol RNA was extracted with Ambion mirVana, in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol, with Illumina iScan System.
Description 4655400096_F
Data processing The data were normalised using quantile normalisation with BeadStudio 3.0
 
Submission date Oct 07, 2009
Last update date Oct 01, 2013
Contact name Riccardo Lorenzo Rossi
E-mail(s) rossi@ingm.it
URL http://www.ingm.it
Organization name Fondazione INGM
Department Integrative Biology
Lab Pagani
Street address Via Trivulzio 10
City Milano
State/province MI
ZIP/Postal code 20149
Country Italy
 
Platform ID GPL6885
Series (1)
GSE18463 The effects of Hmgb1 depletion on gene expression in murine cells

Data table header descriptions
ID_REF
VALUE quantile normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 1446.126 0
ILMN_2721178 258.6736 0
ILMN_3033922 1024.348 0
ILMN_3092673 4329.854 0
ILMN_2816356 105.5851 0.2493734
ILMN_2808939 786.9895 0
ILMN_2634564 553.2977 0
ILMN_2737647 102.7654 0.3659148
ILMN_2734484 509.2249 0
ILMN_2952292 177.7752 0
ILMN_2699078 107.4397 0.1904762
ILMN_1213681 191.5554 0
ILMN_2735413 88.40517 0.9498747
ILMN_2735415 101.4716 0.424812
ILMN_2891688 783.3268 0
ILMN_2637698 3659.991 0
ILMN_2674228 228.0693 0
ILMN_2601546 105.4891 0.2518797
ILMN_1230831 95.65909 0.6904762
ILMN_2848071 104.2751 0.3032582

Total number of rows: 25697

Table truncated, full table size 718 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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