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Sample GSM459881 Query DataSets for GSM459881
Status Public on Oct 01, 2013
Title KO_S_rep2
Sample type RNA
Source name KO MEF S-phase synchronized cells
Organism Mus musculus
Characteristics cell type: mouse embryonic fibroblasts (MEF)
phase: S
Treatment protocol NA
Growth protocol NA
Extracted molecule total RNA
Extraction protocol RNA was extracted with Ambion mirVana, in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol, with Illumina iScan System.
Description 4655400096_H
Data processing The data were normalised using quantile normalisation with BeadStudio 3.0
Submission date Oct 07, 2009
Last update date Oct 01, 2013
Contact name Riccardo Lorenzo Rossi
Organization name Fondazione INGM
Department Integrative Biology
Lab Pagani
Street address Via Trivulzio 10
City Milano
State/province MI
ZIP/Postal code 20149
Country Italy
Platform ID GPL6885
Series (1)
GSE18463 The effects of Hmgb1 depletion on gene expression in murine cells

Data table header descriptions
VALUE quantile normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 1355.65 0
ILMN_2721178 263.9845 0
ILMN_3033922 952.9494 0
ILMN_3092673 4372.902 0
ILMN_2816356 122.2064 0.01503759
ILMN_2808939 893.8062 0
ILMN_2634564 511.3043 0
ILMN_2737647 100.9344 0.4774436
ILMN_2734484 469.899 0
ILMN_2952292 181.814 0
ILMN_2699078 103.5637 0.3458647
ILMN_1213681 194.9472 0
ILMN_2735413 86.61738 0.9774436
ILMN_2735415 96.13251 0.7092732
ILMN_2891688 773.0239 0
ILMN_2637698 3628.83 0
ILMN_2674228 220.1936 0
ILMN_2601546 107.3978 0.20802
ILMN_1230831 122.1487 0.01503759
ILMN_2848071 106.2122 0.245614

Total number of rows: 25697

Table truncated, full table size 717 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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