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Sample GSM461510 Query DataSets for GSM461510
Status Public on Oct 01, 2010
Title Spinal cord ependymal cells rep 3
Sample type RNA
 
Source name Spinal cord ependymal cells, FACS isolated, CD133+/CD24+/CD45neg/CD34neg
Organism Mus musculus
Characteristics strain: C57Bl/6
developmental stage: adult
cell source: FACS sorted from tissue
facs phenotype: D133+/CD24+/CD45neg/CD34neg
Extracted molecule total RNA
Extraction protocol RNA was extracted and purified with QIAgen's RNeasy Micro Kit including DNase I treatment
Label biotin
Label protocol RNA amplification and biotin-labeling were achieved with the TargetAmp 2-Round Biotin-aRNA Amplification Kit (Epicentre)
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description SC_03
Data processing Raw data was background-corrected and summarized using BeadStudio software (Illumina) and further processed with the Bioconductor/Lumi package; data were normalized applying quantile normalization and variance stabilization (function vst).
 
Submission date Oct 13, 2009
Last update date Oct 13, 2009
Contact name Ulrike A. Nuber
Organization name Lund University
Street address Klinikgatan 26
City Lund
ZIP/Postal code SE-22184
Country Sweden
 
Platform ID GPL6105
Series (1)
GSE18528 Comparative analysis of ependymal cells from the lateral ventricular wall and the spinal cord of adult mice

Data table header descriptions
ID_REF
VALUE quantile normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1212602 6.581495993 0.9457268
ILMN_1212603 6.656322728 0.5483469
ILMN_1212605 8.346942804 0
ILMN_1212607 6.890064063 0.04491578
ILMN_1212608 6.97497367 0.02121023
ILMN_1212610 6.67718135 0.4379289
ILMN_1212612 7.087539255 0.01122895
ILMN_1212614 6.600248447 0.8827199
ILMN_1212616 6.636268456 0.6818466
ILMN_1212619 6.941813898 0.02807236
ILMN_1212623 6.663859954 0.5071741
ILMN_1212625 7.424741764 0.003742982
ILMN_1212626 6.773002315 0.1422333
ILMN_1212628 6.687939164 0.3942608
ILMN_1212632 6.602670842 0.8764816
ILMN_1212633 6.674406368 0.4472863
ILMN_1212636 9.530778492 0
ILMN_1212637 11.06188739 0
ILMN_1212639 7.265219032 0.006238303
ILMN_1212644 6.715081739 0.2925764

Total number of rows: 46632

Table truncated, full table size 1525 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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