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| Status |
Public on Jan 13, 2010 |
| Title |
DFCI #121/123 75/25 rep1 |
| Sample type |
RNA |
| |
|
| Source name |
Human ovarian tumor
|
| Organism |
Homo sapiens |
| Characteristics |
gender: female
tissue: ovarian tumor
cell types: DFCI 121, DFCI 123
ratio mix: 75% 121 / 25% 123
|
| Treatment protocol |
Formalin-fixed, paraffin-embedded.
|
| Extracted molecule |
total RNA |
| Extraction protocol |
RNA was extracted with a modified protocol of the RNeasy FFPE Kit (Qiagen).
|
| Label |
Cy3
|
| Label protocol |
Standard Illumina labelling protocol.
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| |
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| Hybridization protocol |
Standard Illumina hybridization protocol.
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| Scan protocol |
Standard Illumina scanning protocol.
|
| Description |
replicate 1
|
| Data processing |
Raw data was analyzed using GenomeStudio v1.1.
Non-normalized data is available in the 'GSE18767_nonorm_nobkgd.txt' file, which is linked to the Series GSE18767 record as a supplementary file.
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| |
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| Submission date |
Oct 27, 2009 |
| Last update date |
Jan 13, 2010 |
| Contact name |
Craig April |
| E-mail(s) |
capril@illumina.com
|
| Organization name |
Illumina, Inc.
|
| Street address |
9885 Towne Centre Drive
|
| City |
San Diego |
| State/province |
CA |
| ZIP/Postal code |
92121-1975 |
| Country |
USA |
| |
|
| Platform ID |
GPL6883 |
| Series (2) |
| GSE17599 |
Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Tissue Samples |
| GSE18767 |
Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Ovarian Tumor Tissue Samples: Ratios |
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| Data table header descriptions |
| ID_REF |
|
| VALUE |
quantile normalized |
| DFCI #121/123 75/25 rep1.Avg_NBEADS |
|
| DFCI #121/123 75/25 rep1.BEAD_STDERR |
|
| DFCI #121/123 75/25 rep1.Detection Pval |
|
| Data table |
| ID_REF |
VALUE |
DFCI #121/123 75/25 rep1.Avg_NBEADS |
DFCI #121/123 75/25 rep1.BEAD_STDERR |
DFCI #121/123 75/25 rep1.Detection Pval |
| ILMN_1762337 |
3772.128 |
44 |
2.601744 |
0 |
| ILMN_2055271 |
1151 |
25 |
2.601491 |
0.01618123 |
| ILMN_2383229 |
116.813 |
34 |
1.935226 |
0.5372168 |
| ILMN_1806310 |
116.4091 |
34 |
1.994669 |
0.5372168 |
| ILMN_1779670 |
151.2372 |
45 |
1.857836 |
0.433657 |
| ILMN_2321282 |
250.8057 |
45 |
1.669528 |
0.2815534 |
| ILMN_1772582 |
2564.472 |
50 |
1.911809 |
0 |
| ILMN_1717783 |
310.8034 |
36 |
1.930303 |
0.2168285 |
| ILMN_1814316 |
4567.522 |
48 |
2.385725 |
0 |
| ILMN_2359168 |
4135.323 |
38 |
2.656214 |
0 |
| ILMN_1731507 |
68.77381 |
33 |
2.287083 |
0.7831715 |
| ILMN_1787689 |
73.10205 |
39 |
1.480601 |
0.7411003 |
| ILMN_1745607 |
14952.73 |
48 |
14.02197 |
0 |
| ILMN_2136495 |
1310.691 |
26 |
2.889107 |
0.01294498 |
| ILMN_1668111 |
505.338 |
32 |
2.116285 |
0.09708738 |
| ILMN_2295559 |
183.7072 |
51 |
1.751737 |
0.3851133 |
| ILMN_1735045 |
215.2486 |
40 |
2.063764 |
0.3333333 |
| ILMN_1680754 |
277.9409 |
38 |
2.029273 |
0.2394822 |
| ILMN_2375184 |
203.4491 |
36 |
1.967961 |
0.3527508 |
| ILMN_1659452 |
621.1579 |
54 |
1.435835 |
0.0776699 |
Total number of rows: 24526
Table truncated, full table size 972 Kbytes.
| Supplementary data files not provided |
| Processed data included within Sample table |
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