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| Status |
Public on Jan 13, 2010 |
| Title |
DFCI #121/123 66/33 rep1 |
| Sample type |
RNA |
| |
|
| Source name |
Human ovarian tumor
|
| Organism |
Homo sapiens |
| Characteristics |
gender: female
tissue: ovarian tumor
cell types: DFCI 121, DFCI 123
ratio mix: 66% 121 / 33% 123
|
| Treatment protocol |
Formalin-fixed, paraffin-embedded.
|
| Extracted molecule |
total RNA |
| Extraction protocol |
RNA was extracted with a modified protocol of the RNeasy FFPE Kit (Qiagen).
|
| Label |
Cy3
|
| Label protocol |
Standard Illumina labelling protocol.
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| |
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| Hybridization protocol |
Standard Illumina hybridization protocol.
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| Scan protocol |
Standard Illumina scanning protocol.
|
| Description |
replicate 1
|
| Data processing |
Raw data was analyzed using GenomeStudio v1.1.
Non-normalized data is available in the 'GSE18767_nonorm_nobkgd.txt' file, which is linked to the Series GSE18767 record as a supplementary file.
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| |
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| Submission date |
Oct 27, 2009 |
| Last update date |
Jan 13, 2010 |
| Contact name |
Craig April |
| E-mail(s) |
capril@illumina.com
|
| Organization name |
Illumina, Inc.
|
| Street address |
9885 Towne Centre Drive
|
| City |
San Diego |
| State/province |
CA |
| ZIP/Postal code |
92121-1975 |
| Country |
USA |
| |
|
| Platform ID |
GPL6883 |
| Series (2) |
| GSE17599 |
Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Tissue Samples |
| GSE18767 |
Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Ovarian Tumor Tissue Samples: Ratios |
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| Data table header descriptions |
| ID_REF |
|
| VALUE |
quantile normalized |
| DFCI #121/123 66/33 rep1.Avg_NBEADS |
|
| DFCI #121/123 66/33 rep1.BEAD_STDERR |
|
| DFCI #121/123 66/33 rep1.Detection Pval |
|
| Data table |
| ID_REF |
VALUE |
DFCI #121/123 66/33 rep1.Avg_NBEADS |
DFCI #121/123 66/33 rep1.BEAD_STDERR |
DFCI #121/123 66/33 rep1.Detection Pval |
| ILMN_1762337 |
3408.414 |
50 |
129.0742 |
0 |
| ILMN_2055271 |
477.797 |
32 |
10.40662 |
0.003236246 |
| ILMN_2383229 |
101.5163 |
39 |
5.196399 |
0.0776699 |
| ILMN_1806310 |
62.96915 |
45 |
5.301964 |
0.3333333 |
| ILMN_1779670 |
291.6344 |
32 |
16.78216 |
0.009708738 |
| ILMN_2321282 |
125.0632 |
35 |
6.196372 |
0.05177994 |
| ILMN_1772582 |
2587.676 |
43 |
98.3442 |
0 |
| ILMN_1717783 |
548.0353 |
45 |
29.3507 |
0.003236246 |
| ILMN_1814316 |
5246.133 |
34 |
147.3511 |
0 |
| ILMN_2359168 |
5133.817 |
35 |
141.2481 |
0 |
| ILMN_1731507 |
71.52188 |
41 |
5.935252 |
0.184466 |
| ILMN_1787689 |
77.65176 |
29 |
9.093267 |
0.1488673 |
| ILMN_1745607 |
7250.016 |
47 |
268.3366 |
0 |
| ILMN_2136495 |
392.1385 |
35 |
20.95505 |
0.006472492 |
| ILMN_1668111 |
116.844 |
39 |
5.265328 |
0.05825243 |
| ILMN_2295559 |
52.72633 |
51 |
4.522748 |
0.5987055 |
| ILMN_1735045 |
540.0359 |
38 |
25.10554 |
0.003236246 |
| ILMN_1680754 |
81.72526 |
25 |
6.243657 |
0.1197411 |
| ILMN_2375184 |
118.5828 |
43 |
6.933182 |
0.05825243 |
| ILMN_1659452 |
130.868 |
47 |
5.616899 |
0.04530744 |
Total number of rows: 24526
Table truncated, full table size 939 Kbytes.
| Supplementary data files not provided |
| Processed data included within Sample table |
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