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| Status |
Public on Jan 13, 2010 |
| Title |
DFCI #121/123 50/50 rep1 |
| Sample type |
RNA |
| |
|
| Source name |
Human ovarian tumor
|
| Organism |
Homo sapiens |
| Characteristics |
gender: female
tissue: ovarian tumor
cell types: DFCI 121, DFCI 123
ratio mix: 50% 121 / 50% 123
|
| Treatment protocol |
Formalin-fixed, paraffin-embedded.
|
| Extracted molecule |
total RNA |
| Extraction protocol |
RNA was extracted with a modified protocol of the RNeasy FFPE Kit (Qiagen).
|
| Label |
Cy3
|
| Label protocol |
Standard Illumina labelling protocol.
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| |
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| Hybridization protocol |
Standard Illumina hybridization protocol.
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| Scan protocol |
Standard Illumina scanning protocol.
|
| Description |
replicate 1
|
| Data processing |
Raw data was analyzed using GenomeStudio v1.1.
Non-normalized data is available in the 'GSE18767_nonorm_nobkgd.txt' file, which is linked to the Series GSE18767 record as a supplementary file.
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| |
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| Submission date |
Oct 27, 2009 |
| Last update date |
Jan 13, 2010 |
| Contact name |
Craig April |
| E-mail(s) |
capril@illumina.com
|
| Organization name |
Illumina, Inc.
|
| Street address |
9885 Towne Centre Drive
|
| City |
San Diego |
| State/province |
CA |
| ZIP/Postal code |
92121-1975 |
| Country |
USA |
| |
|
| Platform ID |
GPL6883 |
| Series (2) |
| GSE17599 |
Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Tissue Samples |
| GSE18767 |
Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Ovarian Tumor Tissue Samples: Ratios |
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| Data table header descriptions |
| ID_REF |
|
| VALUE |
quantile normalized |
| DFCI #121/123 50/50 rep1.Avg_NBEADS |
|
| DFCI #121/123 50/50 rep1.BEAD_STDERR |
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| DFCI #121/123 50/50 rep1.Detection Pval |
|
| Data table |
| ID_REF |
VALUE |
DFCI #121/123 50/50 rep1.Avg_NBEADS |
DFCI #121/123 50/50 rep1.BEAD_STDERR |
DFCI #121/123 50/50 rep1.Detection Pval |
| ILMN_1762337 |
3812.521 |
46 |
169.6023 |
0 |
| ILMN_2055271 |
390.7068 |
31 |
23.47322 |
0.003236246 |
| ILMN_2383229 |
57.60234 |
40 |
7.119696 |
0.433657 |
| ILMN_1806310 |
62.07728 |
36 |
9.017398 |
0.3106796 |
| ILMN_1779670 |
440.6276 |
43 |
24.93361 |
0.003236246 |
| ILMN_2321282 |
111.7587 |
39 |
8.93743 |
0.05825243 |
| ILMN_1772582 |
1552.062 |
43 |
88.36201 |
0 |
| ILMN_1717783 |
398.8731 |
41 |
28.50402 |
0.003236246 |
| ILMN_1814316 |
4772.007 |
34 |
208.5742 |
0 |
| ILMN_2359168 |
5009.587 |
38 |
122.6319 |
0 |
| ILMN_1731507 |
151.0558 |
38 |
8.757625 |
0.0420712 |
| ILMN_1787689 |
81.82386 |
44 |
6.191095 |
0.1067961 |
| ILMN_1745607 |
6243.989 |
35 |
361.0567 |
0 |
| ILMN_2136495 |
217.0057 |
41 |
12.39827 |
0.01618123 |
| ILMN_1668111 |
59.79659 |
35 |
6.581 |
0.3592233 |
| ILMN_2295559 |
47.66941 |
38 |
5.181368 |
0.7637541 |
| ILMN_1735045 |
570.2142 |
51 |
37.6422 |
0 |
| ILMN_1680754 |
80.40593 |
40 |
6.072663 |
0.1100324 |
| ILMN_2375184 |
107.8946 |
37 |
6.647188 |
0.06148867 |
| ILMN_1659452 |
92.18882 |
53 |
9.819519 |
0.0776699 |
Total number of rows: 24526
Table truncated, full table size 934 Kbytes.
| Supplementary data files not provided |
| Processed data included within Sample table |
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