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| Status |
Public on Jan 13, 2010 |
| Title |
DFCI #121/123 33/66 rep4 |
| Sample type |
RNA |
| |
|
| Source name |
Human ovarian tumor
|
| Organism |
Homo sapiens |
| Characteristics |
gender: female
tissue: ovarian tumor
cell types: DFCI 121, DFCI 123
ratio mix: 33% 121 / 66% 123
|
| Treatment protocol |
Formalin-fixed, paraffin-embedded.
|
| Extracted molecule |
total RNA |
| Extraction protocol |
RNA was extracted with a modified protocol of the RNeasy FFPE Kit (Qiagen).
|
| Label |
Cy3
|
| Label protocol |
Standard Illumina labelling protocol.
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| |
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| Hybridization protocol |
Standard Illumina hybridization protocol.
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| Scan protocol |
Standard Illumina scanning protocol.
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| Description |
replicate 4
|
| Data processing |
Raw data was analyzed using GenomeStudio v1.1.
Non-normalized data is available in the 'GSE18767_nonorm_nobkgd.txt' file, which is linked to the Series GSE18767 record as a supplementary file.
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| |
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| Submission date |
Oct 27, 2009 |
| Last update date |
Jan 13, 2010 |
| Contact name |
Craig April |
| E-mail(s) |
capril@illumina.com
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| Organization name |
Illumina, Inc.
|
| Street address |
9885 Towne Centre Drive
|
| City |
San Diego |
| State/province |
CA |
| ZIP/Postal code |
92121-1975 |
| Country |
USA |
| |
|
| Platform ID |
GPL6883 |
| Series (2) |
| GSE17599 |
Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Tissue Samples |
| GSE18767 |
Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Ovarian Tumor Tissue Samples: Ratios |
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| Data table header descriptions |
| ID_REF |
|
| VALUE |
quantile normalized |
| DFCI #121/123 33/66 rep4.Avg_NBEADS |
|
| DFCI #121/123 33/66 rep4.BEAD_STDERR |
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| DFCI #121/123 33/66 rep4.Detection Pval |
|
| Data table |
| ID_REF |
VALUE |
DFCI #121/123 33/66 rep4.Avg_NBEADS |
DFCI #121/123 33/66 rep4.BEAD_STDERR |
DFCI #121/123 33/66 rep4.Detection Pval |
| ILMN_1762337 |
5230.305 |
48 |
196.5738 |
0 |
| ILMN_2055271 |
508.2977 |
35 |
26.61162 |
0.003236246 |
| ILMN_2383229 |
108.9808 |
34 |
7.478909 |
0.06472492 |
| ILMN_1806310 |
59.81514 |
35 |
5.766233 |
0.4174757 |
| ILMN_1779670 |
77.8267 |
47 |
6.84078 |
0.1456311 |
| ILMN_2321282 |
103.3095 |
42 |
6.911633 |
0.06796116 |
| ILMN_1772582 |
878.5516 |
47 |
43.25482 |
0 |
| ILMN_1717783 |
362.4644 |
41 |
21.67885 |
0.009708738 |
| ILMN_1814316 |
3534.091 |
35 |
198.3893 |
0 |
| ILMN_2359168 |
3768.435 |
40 |
143.6698 |
0 |
| ILMN_1731507 |
152.1712 |
36 |
10.51827 |
0.04530744 |
| ILMN_1787689 |
84.38693 |
36 |
8.72207 |
0.1197411 |
| ILMN_1745607 |
8339.964 |
27 |
477.8595 |
0 |
| ILMN_2136495 |
264.5339 |
38 |
13.24642 |
0.009708738 |
| ILMN_1668111 |
37.83826 |
39 |
5.478764 |
0.9546925 |
| ILMN_2295559 |
50.22168 |
42 |
7.410154 |
0.7022654 |
| ILMN_1735045 |
847.1599 |
59 |
44.19882 |
0 |
| ILMN_1680754 |
71.40521 |
40 |
7.278837 |
0.2006472 |
| ILMN_2375184 |
71.89984 |
36 |
6.972954 |
0.197411 |
| ILMN_1659452 |
79.41379 |
39 |
8.040113 |
0.1326861 |
Total number of rows: 24526
Table truncated, full table size 938 Kbytes.
| Supplementary data files not provided |
| Processed data included within Sample table |
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