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| Status |
Public on Jan 13, 2010 |
| Title |
DFCI #121/123 50/50 rep5 |
| Sample type |
RNA |
| |
|
| Source name |
Human ovarian tumor
|
| Organism |
Homo sapiens |
| Characteristics |
gender: female
tissue: ovarian tumor
cell types: DFCI 121, DFCI 123
ratio mix: 50% 121 / 50% 123
|
| Treatment protocol |
Formalin-fixed, paraffin-embedded.
|
| Extracted molecule |
total RNA |
| Extraction protocol |
RNA was extracted with a modified protocol of the RNeasy FFPE Kit (Qiagen).
|
| Label |
Cy3
|
| Label protocol |
Standard Illumina labelling protocol.
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| |
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| Hybridization protocol |
Standard Illumina hybridization protocol.
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| Scan protocol |
Standard Illumina scanning protocol.
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| Description |
replicate 5
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| Data processing |
Raw data was analyzed using GenomeStudio v1.1.
Non-normalized data is available in the 'GSE18767_nonorm_nobkgd.txt' file, which is linked to the Series GSE18767 record as a supplementary file.
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| |
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| Submission date |
Oct 27, 2009 |
| Last update date |
Jan 13, 2010 |
| Contact name |
Craig April |
| E-mail(s) |
capril@illumina.com
|
| Organization name |
Illumina, Inc.
|
| Street address |
9885 Towne Centre Drive
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| City |
San Diego |
| State/province |
CA |
| ZIP/Postal code |
92121-1975 |
| Country |
USA |
| |
|
| Platform ID |
GPL6883 |
| Series (2) |
| GSE17599 |
Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Tissue Samples |
| GSE18767 |
Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Ovarian Tumor Tissue Samples: Ratios |
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| Data table header descriptions |
| ID_REF |
|
| VALUE |
quantile normalized |
| DFCI #121/123 50/50 rep5.Avg_NBEADS |
|
| DFCI #121/123 50/50 rep5.BEAD_STDERR |
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| DFCI #121/123 50/50 rep5.Detection Pval |
|
| Data table |
| ID_REF |
VALUE |
DFCI #121/123 50/50 rep5.Avg_NBEADS |
DFCI #121/123 50/50 rep5.BEAD_STDERR |
DFCI #121/123 50/50 rep5.Detection Pval |
| ILMN_1762337 |
2381.583 |
32 |
137.2842 |
0 |
| ILMN_2055271 |
545.5048 |
29 |
24.91982 |
0.003236246 |
| ILMN_2383229 |
133.3221 |
29 |
7.932967 |
0.04530744 |
| ILMN_1806310 |
61.50609 |
40 |
5.737895 |
0.3721683 |
| ILMN_1779670 |
219.1773 |
44 |
9.126714 |
0.02588997 |
| ILMN_2321282 |
123.4245 |
41 |
7.776269 |
0.05501618 |
| ILMN_1772582 |
1365.771 |
42 |
39.79913 |
0 |
| ILMN_1717783 |
197.9896 |
37 |
13.39892 |
0.02588997 |
| ILMN_1814316 |
7135.637 |
41 |
263.3923 |
0 |
| ILMN_2359168 |
6851.478 |
30 |
286.2877 |
0 |
| ILMN_1731507 |
56.49734 |
42 |
6.623646 |
0.5145631 |
| ILMN_1787689 |
94.18657 |
36 |
5.944469 |
0.09385113 |
| ILMN_1745607 |
5581.707 |
31 |
209.0383 |
0 |
| ILMN_2136495 |
495.9879 |
43 |
17.01834 |
0.003236246 |
| ILMN_1668111 |
58.80387 |
37 |
5.321953 |
0.4530744 |
| ILMN_2295559 |
43.84715 |
54 |
4.659125 |
0.8932039 |
| ILMN_1735045 |
342.8406 |
54 |
18.17144 |
0.01294498 |
| ILMN_1680754 |
78.36848 |
38 |
5.612743 |
0.1488673 |
| ILMN_2375184 |
200.7764 |
48 |
7.549903 |
0.02588997 |
| ILMN_1659452 |
186.7778 |
43 |
9.915726 |
0.02912621 |
Total number of rows: 24526
Table truncated, full table size 935 Kbytes.
| Supplementary data files not provided |
| Processed data included within Sample table |
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