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| Status |
Public on Jan 13, 2010 |
| Title |
DFCI #121/123 33/66 rep5 |
| Sample type |
RNA |
| |
|
| Source name |
Human ovarian tumor
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| Organism |
Homo sapiens |
| Characteristics |
gender: female
tissue: ovarian tumor
cell types: DFCI 121, DFCI 123
ratio mix: 33% 121 / 66% 123
|
| Treatment protocol |
Formalin-fixed, paraffin-embedded.
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| Extracted molecule |
total RNA |
| Extraction protocol |
RNA was extracted with a modified protocol of the RNeasy FFPE Kit (Qiagen).
|
| Label |
Cy3
|
| Label protocol |
Standard Illumina labelling protocol.
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| |
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| Hybridization protocol |
Standard Illumina hybridization protocol.
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| Scan protocol |
Standard Illumina scanning protocol.
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| Description |
replicate 5
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| Data processing |
Raw data was analyzed using GenomeStudio v1.1.
Non-normalized data is available in the 'GSE18767_nonorm_nobkgd.txt' file, which is linked to the Series GSE18767 record as a supplementary file.
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| |
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| Submission date |
Oct 27, 2009 |
| Last update date |
Jan 13, 2010 |
| Contact name |
Craig April |
| E-mail(s) |
capril@illumina.com
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| Organization name |
Illumina, Inc.
|
| Street address |
9885 Towne Centre Drive
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| City |
San Diego |
| State/province |
CA |
| ZIP/Postal code |
92121-1975 |
| Country |
USA |
| |
|
| Platform ID |
GPL6883 |
| Series (2) |
| GSE17599 |
Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Tissue Samples |
| GSE18767 |
Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Ovarian Tumor Tissue Samples: Ratios |
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| Data table header descriptions |
| ID_REF |
|
| VALUE |
quantile normalized |
| DFCI #121/123 33/66 rep5.Avg_NBEADS |
|
| DFCI #121/123 33/66 rep5.BEAD_STDERR |
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| DFCI #121/123 33/66 rep5.Detection Pval |
|
| Data table |
| ID_REF |
VALUE |
DFCI #121/123 33/66 rep5.Avg_NBEADS |
DFCI #121/123 33/66 rep5.BEAD_STDERR |
DFCI #121/123 33/66 rep5.Detection Pval |
| ILMN_1762337 |
3111.478 |
39 |
147.9438 |
0 |
| ILMN_2055271 |
477.797 |
39 |
18.08118 |
0.003236246 |
| ILMN_2383229 |
63.54005 |
28 |
5.32224 |
0.3268608 |
| ILMN_1806310 |
66.40932 |
42 |
4.87855 |
0.2815534 |
| ILMN_1779670 |
627.192 |
52 |
23.28469 |
0 |
| ILMN_2321282 |
94.85086 |
41 |
7.596797 |
0.09061489 |
| ILMN_1772582 |
842.6522 |
46 |
40.63478 |
0 |
| ILMN_1717783 |
154.3216 |
34 |
11.73095 |
0.0420712 |
| ILMN_1814316 |
7737.374 |
42 |
265.1902 |
0 |
| ILMN_2359168 |
7318.806 |
50 |
239.9689 |
0 |
| ILMN_1731507 |
135.9856 |
34 |
8.968965 |
0.04530744 |
| ILMN_1787689 |
102.6094 |
38 |
5.606669 |
0.07443365 |
| ILMN_1745607 |
5504.726 |
31 |
333.4282 |
0 |
| ILMN_2136495 |
225.5127 |
30 |
11.69384 |
0.01941748 |
| ILMN_1668111 |
44.0106 |
32 |
6.618994 |
0.8899676 |
| ILMN_2295559 |
40.79871 |
62 |
4.364625 |
0.9482201 |
| ILMN_1735045 |
358.2115 |
49 |
19.28712 |
0.006472492 |
| ILMN_1680754 |
81.44507 |
31 |
5.819114 |
0.1229773 |
| ILMN_2375184 |
180.0998 |
43 |
10.37126 |
0.02912621 |
| ILMN_1659452 |
178.26 |
38 |
6.970491 |
0.02912621 |
Total number of rows: 24526
Table truncated, full table size 931 Kbytes.
| Supplementary data files not provided |
| Processed data included within Sample table |
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