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Sample GSM465831 Query DataSets for GSM465831
Status Public on Jan 13, 2010
Title DFCI #129 1 ng rep1
Sample type RNA
 
Source name Human ovarian tumor
Organism Homo sapiens
Characteristics gender: female
tissue: ovarian tumor
cell type: DFCI 129
amount: 1 ng
Treatment protocol Formalin-fixed, paraffin-embedded.
Extracted molecule total RNA
Extraction protocol RNA was extracted with a modified protocol of the RNeasy FFPE Kit (Qiagen).
Label Cy3
Label protocol Standard Illumina labelling protocol.
 
Hybridization protocol Standard Illumina hybridization protocol.
Scan protocol Standard Illumina scanning protocol.
Description replicate 1
Data processing Raw data was analyzed using GenomeStudio v1.1.

Non-normalized data is available in the 'GSE18769_nonorm_nobkgd.txt' file, which is linked to the Series GSE18769 record as a supplementary file.
 
Submission date Oct 27, 2009
Last update date Jan 13, 2010
Contact name Craig April
E-mail(s) capril@illumina.com
Organization name Illumina, Inc.
Street address 9885 Towne Centre Drive
City San Diego
State/province CA
ZIP/Postal code 92121-1975
Country USA
 
Platform ID GPL6883
Series (2)
GSE17599 Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Tissue Samples
GSE18769 Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Ovarian Tumor Tissue Samples: Dilutions

Data table header descriptions
ID_REF
VALUE quantile normalized
DFCI #129 1 ng rep1.Avg_NBEADS
DFCI #129 1 ng rep1.BEAD_STDERR
DFCI #129 1 ng rep1.Detection Pval

Data table
ID_REF VALUE DFCI #129 1 ng rep1.Avg_NBEADS DFCI #129 1 ng rep1.BEAD_STDERR DFCI #129 1 ng rep1.Detection Pval
ILMN_1762337 131.4543 42 7.767914 0.6472492
ILMN_2055271 1660.19 30 44.8678 0
ILMN_2383229 215.7369 28 7.11184 0.4724919
ILMN_1806310 169.8722 30 8.466525 0.5533981
ILMN_1779670 289.5853 32 7.274574 0.3883495
ILMN_2321282 1134.283 42 9.290021 0.04854369
ILMN_1772582 411.8797 40 6.939899 0.2944984
ILMN_1717783 1815.146 35 49.1575 0
ILMN_1814316 3111.958 36 87.2674 0
ILMN_2359168 3012.977 44 96.58216 0
ILMN_1731507 99.19795 34 4.620061 0.7313916
ILMN_1787689 954.1202 32 7.905492 0.07119741
ILMN_1745607 3386.193 46 179.8655 0
ILMN_2136495 97.5765 30 6.090306 0.7346278
ILMN_1668111 61.49781 34 8.61138 0.9352751
ILMN_2295559 55.70713 34 7.197556 0.9611651
ILMN_1735045 2086.463 47 73.41259 0
ILMN_1680754 919.828 28 9.846539 0.0776699
ILMN_2375184 687.4824 43 8.177467 0.1488673
ILMN_1659452 628.9232 35 6.140103 0.1909385

Total number of rows: 24526

Table truncated, full table size 963 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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