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Sample GSM4661 Query DataSets for GSM4661
Status Public on Mar 06, 2003
Title 2nd UMRR vs Liver
Sample type RNA
 
Channel 1
Source name UMRR (Universal Mouse Reference RNA) was labeled with Cyanine-3 (green).
Organism Mus musculus
Extracted molecule total RNA
 
Channel 2
Source name Liver was labeled with Cyanine-5 (red)
Organism Mus musculus
Extracted molecule total RNA
 
 
Description UMRR (Catalog #740100) was purchased from Stratagene and used as the starting material. cRNA was made by the single round amplification method.
Liver total RNA (Catalog #64042-1) was purchased from Clontech and used as the starting material. cRNA was made by the single round amplification method.
 
Submission date Mar 06, 2003
Last update date May 27, 2005
Contact name Sangdun Choi
E-mail(s) schoi@its.caltech.edu
Phone 626-395-8732
URL http://www.signaling-gateway.org
Organization name California Institute of Technology
Department Biology
Lab Alliance for Cellular Signaling Molecular Biology Laboratory
Street address 1200 E. California Blvd
City Pasadena
State/province CA
ZIP/Postal code 91125
Country USA
 
Platform ID GPL260
Series (2)
GSE333 UMRR vs Liver
GSE6437 UMRR vs Liver or Spleen

Data table header descriptions
ID_REF Feature number which correpond to the order of genes on the array
G_PROCESSED Processed Signal, after dye normalization and background subtraction, used for computation of log ratio
G_MEAN Green Channel Mean Raw Intensity
G_MEDIAN Green Channel Median Raw Intensity
G_SD Green Channel Standard Deviation
G_BG_MEAN Green Channel Mean Background Level
G_BG_MEDIAN Green Channel Median Background Level
G_BG_SD Green Channel Background Standard Deviation
R_PROCESSED Processed Signal, after dye normalization and background subtraction, used for computation of log ratio
R_MEAN Red Channel Mean Raw Intensity
R_MEDIAN Red Channel Median Raw Intensity
R_SD Red Channel Standard Deviation
R_BG_MEAN Red Channel Mean Background Level
R_BG_MEDIAN Red Channel Median Background Level
R_BG_SD Red Channel Background Standard Deviation
RATIO Log Ratio (base 10)
VALUE Processed Ratio (base 2) after removing saturated spots, spot below 2.6XSD of background, and nonuniform spots.

Data table
ID_REF G_PROCESSED G_MEAN G_MEDIAN G_SD G_BG_MEAN G_BG_MEDIAN G_BG_SD R_PROCESSED R_MEAN R_MEDIAN R_SD R_BG_MEAN R_BG_MEDIAN R_BG_SD RATIO VALUE
1 70600.5 65516.9 65517 0.7698 777.506 772 46.661 44507 32479 30357 7423.47 1211.74 1209 83.9516 -0.200379 0
2 251.511 901.88 890 45.8415 755.026 752 39.8456 97.2102 1120.76 1141 89.0474 1116.73 1107 90.4353 -0.412845 0
3 79.2936 768.636 766.5 41.6259 759.596 754.5 46.0321 130.279 1120.09 1127.5 86.0819 1052.6 1047 95.4765 0.215636 0
4 115.544 764.958 764.5 35.6218 731.805 729 32.4643 48.0101 922.042 924 52.9696 949.067 942 58.7851 -0.381414 0
5 72.4137 747.368 755 29.8705 734.621 730 35.2209 93.1227 958.158 961 26.4853 928.248 930 56.7814 0.109235 0
6 464.284 1120 1120 71.3711 727.537 723 29.7423 344.875 1085.8 1087 78.3268 917.154 916 49.804 -0.129122 0
7 104.028 754.692 746.5 46.1465 722.02 720 28.4696 80.2098 930.038 930.5 63.8946 918.413 915.5 55.0782 -0.112922 0
8 67.8035 739.444 731 35.6957 733.162 731 30.2299 52.9148 926.815 919 68.9214 936.331 928 60.5003 -0.107675 0
9 4574.19 5250.92 5248.5 258.578 733.967 731.5 32.6871 2868.97 2730.42 2645 305.764 942.347 935.5 60.8003 -0.202589 -0.672986091
10 1798.3 2452.85 2333 620.927 729.477 724 34.7468 2719.74 2633.04 2445.5 731.868 906.105 901 50.3259 0.179667 0.596840855
11 58.8729 717.808 714 28.7458 717.715 716 27.6903 42.8807 860.846 855 35.5299 879.901 877 44.4829 -0.137654 0
12 61.7426 723.32 718 26.3592 720.267 717 26.4075 56.1289 887.16 895 64.6501 892.123 888.5 51.5827 -0.0413985 0
13 57.6383 724.739 723 21.0113 723.29 720 27.4359 65.866 915.957 916 54.3678 909.639 900 66.2101 0.0579504 0
14 724.846 1358.96 1379 90.882 718.895 714 30.4056 936.308 1462.52 1459 97.3748 883.497 879 59.5855 0.111173 0.369308712
15 2649.07 3325.15 1784.5 2582.16 723.872 723 28.973 4504.87 3792.38 2210 2694.13 937.282 934 66.8897 0.230589 0
16 1336.93 1949.61 1586.5 596.405 728.636 724.5 32.3722 984.513 1550.64 1408 293.189 947.175 938 59.9074 -0.132888 0
17 361.951 1013.73 1000.5 96.3146 739.803 735 33.1151 188.103 991.773 982.5 82.7492 923.493 918.5 56.9888 -0.284255 0
18 374.745 1051.24 1043 54.2857 738.572 739 28.8492 457.352 1163.36 1176 65.9684 915.641 915 46.8589 0.0865147 0.287395613
19 6994.46 7638.32 7914 993.736 729.526 727.5 31.3504 6834.81 5288.96 5424.5 485.091 913.836 906.5 52.5446 -0.0100279 -0.033311963
20 4952.12 5642.32 5624 565.307 738.947 734 37.3193 3350.34 3017.8 3014 284.182 921.536 916 56.9705 -0.169702 -0.563737842

Total number of rows: 16273

Table truncated, full table size 1961 Kbytes.




Supplementary data files not provided
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