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Sample GSM466728 Query DataSets for GSM466728
Status Public on Jan 06, 2010
Title Mili IP_Tdrd9+/- replicate1
Sample type SRA
 
Source name Mili IP_Tdrd9+/-
Organism Mus musculus
Characteristics strain: C57BL/6
tissue: testes
dev stage: 14 dpp
Treatment protocol Lysate preparation
Growth protocol Mouse testes extract
Extracted molecule total RNA
Extraction protocol Illumina small RNA library preparation kit
Immunoprecipitation and gel elution of ~28-30 nt RNAs by radioactive spike labelling
 
Library strategy RIP-Seq
Library source transcriptomic
Library selection other
Instrument model Illumina Genome Analyzer
 
Description library source: Protein-associated small RNAs
library selection: Immunoprecipitation and gel elution of ~28-30 nt RNAs by radioactive spike labelling
Data processing Alignment with mouse genome July 2007, mm9 assembly
 
Submission date Oct 30, 2009
Last update date May 15, 2019
Contact name Ramesh Pillai
E-mail(s) ramesh.pillai@unige.ch
Organization name University of Geneva
Department Department of Molecular Biology
Street address 30, Quai Ernest-Ansermet
City Gneveva
ZIP/Postal code CH-1211
Country Switzerland
 
Platform ID GPL9185
Series (1)
GSE18825 The TDRD9-MIWI2 complex is essential for piRNA-mediated retrotransposon silencing in the mouse male germline
Relations
SRA SRX015795
BioSample SAMN00007530

Data table header descriptions
SEQUENCE
COUNT readcount

Data table
SEQUENCE COUNT
AACGGATTAAGGATTAAAAGGTACCGC 1
TGGGGCATTTAGTGAAGATATAAAGG 1
AAGGACAGACCTCTGAGAAGCAGAGCTA 1
GCGAGCTGTATGTTCTTAGTTGTGGTAT 1
ATTGCACAGGGAAGTAGTTTGGCATC 1
AAGGACGGAAGCACATAGATACTTCAAAT 1
TAAGAAGAACTGTAAGCATGCAGAAGCCAT 1
TAAAGAACTCAAGAAGGTACACCTCAGA 1
ATGAAAAATGAGCCAAGAACATGCAT 1
TGAGTAGGTGGTACAATGTATGTGAAT 1
TGGATAGATAACAGAAGAGAGAGAGAG 1
TAACTTTGGGTTGGAAGTCGATTAA 1
TCGTGTAGGAGAATGCGAATCGATCC 1
TCTAGAGACTGCCATACACAGGGACCC 1
TAGAATAAGAACGAAATCACTAAAATGGC 1
TGAATCTTGTCGAAGTTACTGCCCCCA 1
TGGCTCTAGATGCATATGTAGCTGAGT 2
TCAAAGAGAACACACATAGAGACTCATG 1
AAGGGAAACAACGCTGGAGATAGAAAC 1
TGACCAAGTAGGCTTCATTCCCAGG 1

Total number of rows: 2448249

Table truncated, full table size 72097 Kbytes.




Supplementary data files not provided
SRA Run SelectorHelp
Processed data included within Sample table
Raw data are available in SRA

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