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Sample GSM46846 Query DataSets for GSM46846
Status Public on Mar 31, 2005
Title Breast - 21808
Sample type RNA
 
Source name Breast
Organism Homo sapiens
Extracted molecule total RNA
 
Description Quality metric = 28S to 18S: 1.4
Patient Age: 40-50
Gender: Female
Ethnic Background: African-American
Tobacco Use : No
Alcohol Consumption?: Yes
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 27
Mammogram: Yes
Number of years in which a mammogram was obtained?: 6-10
Oral contraceptives?: Yes
Number of years of use? (Oral contraceptives): 16-20
Oophorectomy?: Yes
Fibrocystic disease?: Yes
Mammogram calcifications?: No
Pathological T: 1c
Pathological N: 0(i-)
Pathological M: 0
Pathological Stage: 1
Pathological Grade: 2
Pathological Multiple Tumors: Yes
Pathological ER: Negative
Pathological PR: Negative
Primary Site: Breast
Histology: Lobular Carcinoma
 
Submission date Mar 31, 2005
Last update date Aug 28, 2018
Contact name Erin Curley
E-mail(s) ecurley@intgen.org
Phone 602-343-8808
Fax 602-343-8440
URL http://www.intgen.org
Organization name IGC
Department
Lab expO
Street address 445 N. 5th Street
City Phoenix
State/province AZ
ZIP/Postal code 85004
Country USA
 
Platform ID GPL570
Series (1)
GSE2109 Expression Project for Oncology (expO)
Relations
Reanalyzed by GSE64985
Reanalyzed by GSE119087

Data table header descriptions
ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS5, normalized
ABS_CALL The detection value calculated by the MAS5
DETECTION P-VALUE The detection p-value calculated by the MAS5

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 2502.7 P 9.5e-005
AFFX-BioB-M_at 3940 P 4.4e-005
AFFX-BioB-3_at 2393.8 P 4.4e-005
AFFX-BioC-5_at 6211.1 P 4.4e-005
AFFX-BioC-3_at 7426.7 P 4.4e-005
AFFX-BioDn-5_at 16362.4 P 4.4e-005
AFFX-BioDn-3_at 25872.5 P 4.4e-005
AFFX-CreX-5_at 67344.1 P 5.2e-005
AFFX-CreX-3_at 75644.7 P 4.4e-005
AFFX-DapX-5_at 189.3 P 0.002023
AFFX-DapX-M_at 1011.6 P 0.000754
AFFX-DapX-3_at 3762.4 P 5.2e-005
AFFX-LysX-5_at 89 P 0.023929
AFFX-LysX-M_at 214.2 P 0.042962
AFFX-LysX-3_at 1037 P 7e-005
AFFX-PheX-5_at 77.4 A 0.574038
AFFX-PheX-M_at 210.3 P 0.002867
AFFX-PheX-3_at 574.3 P 0.000195
AFFX-ThrX-5_at 29.4 A 0.824672
AFFX-ThrX-M_at 215.7 P 0.00762

Total number of rows: 54675

Table truncated, full table size 1452 Kbytes.




Supplementary file Size Download File type/resource
GSM46846.CEL.gz 7.7 Mb (ftp)(http) CEL
Processed data included within Sample table

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