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GEO accession:
Sample GSM46929
Query DataSets for GSM46929
Status
Public on Mar 31, 2005
Title
Kidney - 29279
Sample type
RNA
Source name
Kidney
Organism
Homo sapiens
Extracted molecule
total RNA
Description
Quality metric = 28S to 18S: 1.3
Patient Age: 50-60
Gender: Female
Ethnic Background: African-American
Tobacco Use : Yes
Years of Tobacco Use: 16-20
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: No
Clinical T: 1a
Clinical N: 0
Clinical M: 0
Clinical Stage: 1
Clinical Grade: 1
Primary Site: Kidney
Histology: Papillary renal cell carcinoma
Submission date
Mar 31, 2005
Last update date
Aug 28, 2018
Contact name
Erin Curley
E-mail(s)
ecurley@intgen.org
Phone
602-343-8808
Fax
602-343-8440
URL
http://www.intgen.org
Organization name
IGC
Department
Lab
expO
Street address
445 N. 5th Street
City
Phoenix
State/province
AZ
ZIP/Postal code
85004
Country
USA
Platform ID
GPL570
Series (1)
GSE2109
Expression Project for Oncology (expO)
Relations
Reanalyzed by
GSE64985
Reanalyzed by
GSE119087
Data table header descriptions
ID_REF
The name of the probe set, blank for control probes
VALUE
The signal value calculated by MAS5, normalized
ABS_CALL
The detection value calculated by the MAS5
DETECTION P-VALUE
The detection p-value calculated by the MAS5
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
1032.3
P
0.000195
AFFX-BioB-M_at
1824.3
P
4.4e-005
AFFX-BioB-3_at
1015.3
P
8.1e-005
AFFX-BioC-5_at
2900.6
P
4.4e-005
AFFX-BioC-3_at
2919.1
P
4.4e-005
AFFX-BioDn-5_at
7591.1
P
4.4e-005
AFFX-BioDn-3_at
14373.1
P
4.4e-005
AFFX-CreX-5_at
31346.2
P
4.4e-005
AFFX-CreX-3_at
36900.9
P
4.4e-005
AFFX-DapX-5_at
71
A
0.275146
AFFX-DapX-M_at
38.3
A
0.48511
AFFX-DapX-3_at
102.8
P
0.021893
AFFX-LysX-5_at
50.8
M
0.058428
AFFX-LysX-M_at
3.5
A
0.921998
AFFX-LysX-3_at
43.6
A
0.287726
AFFX-PheX-5_at
29.2
A
0.440646
AFFX-PheX-M_at
3.9
A
0.941556
AFFX-PheX-3_at
65.8
A
0.354453
AFFX-ThrX-5_at
8
A
0.852061
AFFX-ThrX-M_at
60.2
A
0.216524
Total number of rows:
54675
Table truncated, full table size
1443 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM46929.CEL.gz
7.8 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
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