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GEO accession:
Sample GSM46971
Query DataSets for GSM46971
Status
Public on Mar 31, 2005
Title
Liver - 8276
Sample type
RNA
Source name
Liver
Organism
Homo sapiens
Extracted molecule
total RNA
Description
Quality metric = 28S to 18S: 1.1
Patient Age: 40-50
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 31-35
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 2
Presenting Symptoms: Abdominal Pain
Presenting Symptoms: Bright red stools
Presenting Symptoms: Constipation
Presenting Symptoms: Vomiting
Screening studies performed?: Yes
Diagnosis made by: Colonoscopy
Pathological T: 4
Pathological N: 0
Pathological M: 1
Pathological Metastatic Sites: Hepatic
Pathological Stage: 4
Pathological Grade: 2
Primary Site: Colon
Histology: Metastatic Adenocarcinoma
Submission date
Mar 31, 2005
Last update date
Aug 28, 2018
Contact name
Erin Curley
E-mail(s)
ecurley@intgen.org
Phone
602-343-8808
Fax
602-343-8440
URL
http://www.intgen.org
Organization name
IGC
Department
Lab
expO
Street address
445 N. 5th Street
City
Phoenix
State/province
AZ
ZIP/Postal code
85004
Country
USA
Platform ID
GPL570
Series (1)
GSE2109
Expression Project for Oncology (expO)
Relations
Reanalyzed by
GSE64985
Reanalyzed by
GSE119087
Data table header descriptions
ID_REF
The name of the probe set, blank for control probes
VALUE
The signal value calculated by MAS5, normalized
ABS_CALL
The detection value calculated by the MAS5
DETECTION P-VALUE
The detection p-value calculated by the MAS5
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
78.8
A
0.382589
AFFX-BioB-M_at
134.3
P
0.042962
AFFX-BioB-3_at
50.1
A
0.470241
AFFX-BioC-5_at
140.2
P
0.002275
AFFX-BioC-3_at
130.4
P
0.000297
AFFX-BioDn-5_at
470.2
P
0.000857
AFFX-BioDn-3_at
867.5
P
0.000972
AFFX-CreX-5_at
1793.3
P
4.4e-005
AFFX-CreX-3_at
3317.4
P
4.4e-005
AFFX-DapX-5_at
1506.7
P
5.2e-005
AFFX-DapX-M_at
3394
P
7e-005
AFFX-DapX-3_at
5154
P
4.4e-005
AFFX-LysX-5_at
281.1
P
0.000127
AFFX-LysX-M_at
463.8
P
9.5e-005
AFFX-LysX-3_at
736.7
P
0.000127
AFFX-PheX-5_at
512.1
P
7e-005
AFFX-PheX-M_at
640.7
P
5.2e-005
AFFX-PheX-3_at
858.1
P
0.000225
AFFX-ThrX-5_at
567.2
P
7e-005
AFFX-ThrX-M_at
939.8
P
4.4e-005
Total number of rows:
54675
Table truncated, full table size
1443 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM46971.CEL.gz
7.9 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
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