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Sample GSM46974 Query DataSets for GSM46974
Status Public on Mar 31, 2005
Title Breast - 8282
Sample type RNA
 
Source name Breast
Organism Homo sapiens
Extracted molecule total RNA
 
Description Quality metric = 28S to 18S: 1.3
Patient Age: 50-60
Gender: Female
Ethnic Background: American Indian
Tobacco Use : Yes
Years of Tobacco Use: 31-35
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 32
Mammogram: Yes
Number of years in which a mammogram was obtained?: 0-5
Oral contraceptives?: No
Oophorectomy?: Yes
Fibrocystic disease?: No
Mammogram calcifications?: Yes
Pathological T: 2
Pathological N: 1a
Pathological M: 0
Pathological Stage: 2B
Pathological Grade: 3
Pathological ER: Negative
Pathological PR: Negative
Pathological HER/2 Neu: Negative
Primary Site: Breast
Histology: Ductal Carcinoma
 
Submission date Mar 31, 2005
Last update date Aug 28, 2018
Contact name Erin Curley
E-mail(s) ecurley@intgen.org
Phone 602-343-8808
Fax 602-343-8440
URL http://www.intgen.org
Organization name IGC
Department
Lab expO
Street address 445 N. 5th Street
City Phoenix
State/province AZ
ZIP/Postal code 85004
Country USA
 
Platform ID GPL570
Series (1)
GSE2109 Expression Project for Oncology (expO)
Relations
Reanalyzed by GSE64985
Reanalyzed by GSE119087

Data table header descriptions
ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS5, normalized
ABS_CALL The detection value calculated by the MAS5
DETECTION P-VALUE The detection p-value calculated by the MAS5

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 55.6 M 0.062929
AFFX-BioB-M_at 57.3 A 0.216524
AFFX-BioB-3_at 10.3 A 0.58862
AFFX-BioC-5_at 118.4 P 0.004017
AFFX-BioC-3_at 134.9 P 0.00034
AFFX-BioDn-5_at 362.7 P 0.001248
AFFX-BioDn-3_at 715 P 0.004484
AFFX-CreX-5_at 1501.4 P 5.2e-005
AFFX-CreX-3_at 2795.6 P 4.4e-005
AFFX-DapX-5_at 209.3 P 0.000195
AFFX-DapX-M_at 626.5 P 0.001102
AFFX-DapX-3_at 1110.5 P 7e-005
AFFX-LysX-5_at 50.2 P 0.021902
AFFX-LysX-M_at 101 P 0.028457
AFFX-LysX-3_at 143.9 P 0.001593
AFFX-PheX-5_at 56.6 P 0.004017
AFFX-PheX-M_at 85.7 P 0.012547
AFFX-PheX-3_at 172.4 P 0.003212
AFFX-ThrX-5_at 69.3 P 0.012547
AFFX-ThrX-M_at 147 P 0.000195

Total number of rows: 54675

Table truncated, full table size 1442 Kbytes.




Supplementary file Size Download File type/resource
GSM46974.CEL.gz 8.3 Mb (ftp)(http) CEL
Processed data included within Sample table

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