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Sample GSM471176 Query DataSets for GSM471176
Status Public on Aug 20, 2010
Title Liver_Conventional_HFdiet_01
Sample type RNA
 
Source name Liver_Conventional_HFdiet_01
Organism Mus musculus
Characteristics strain: C57BL/6J
tissue: Liver
Treatment protocol High fat diet
Extracted molecule total RNA
Extraction protocol Agencourt RNAdvance tissue kit
Label Biotin
Label protocol Biotinylated cRNA were prepared with the Ambion TotalPrep kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description n/a
Data processing Data generated with Genome Studio software (Illumina). Quantile normalized together with 33 unknown samples (included in GSE19038_non-normalized.txt)
 
Submission date Nov 16, 2009
Last update date Aug 20, 2010
Contact name Frederic Raymond
E-mail(s) frederic.raymond@rd.nestle.com
Organization name Nestle Institute of Health Sciences
Department Functional Genomics
Street address Campus EPFL - Quartier de l'Innovation
City Lausanne
ZIP/Postal code 1015
Country Switzerland
 
Platform ID GPL6103
Series (1)
GSE19038 Germfree C57BL/6J mice are resistant to high fat diet-induced insulin resistance and have altered cholesterol metabolism

Data table header descriptions
ID_REF
VALUE quantile normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2735294 118.8682822 0.001216545
ILMN_1238136 56.92064086 0.2360097
ILMN_1248788 71.99326285 0.03771289
ILMN_2707227 7118.216018 0
ILMN_2721178 184.8511233 0
ILMN_1227723 124.9372613 0.001216545
ILMN_2729028 47.04045143 0.7445256
ILMN_2602282 43.05354118 0.9148418
ILMN_2624326 614.2703765 0
ILMN_2730714 2312.439651 0
ILMN_3162224 394.2043811 0
ILMN_2773981 818.5632006 0
ILMN_2771349 323.7059335 0
ILMN_1215157 308.5563126 0
ILMN_1216623 243.8313807 0
ILMN_2634566 281.4861249 0
ILMN_2763028 46.07907976 0.7907543
ILMN_1228777 57.53069525 0.2141119
ILMN_2737647 53.76256257 0.3600973
ILMN_2744574 167.8978563 0

Total number of rows: 24613

Table truncated, full table size 810 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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