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Status |
Public on Aug 17, 2010 |
Title |
RD, pFM2 IP lane 1 |
Sample type |
SRA |
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Source name |
RD, pFM2 IP
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Organism |
Homo sapiens |
Characteristics |
cell line: RD cell type: rhabdomyosarcoma pax3-fkhr status: negative antibody: pFM2
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Treatment protocol |
None
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Growth protocol |
RPMI with 10% fetal bovine serum.
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Extracted molecule |
genomic DNA |
Extraction protocol |
ChIP-seq
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Library strategy |
ChIP-Seq |
Library source |
genomic |
Library selection |
ChIP |
Instrument model |
Illumina Genome Analyzer |
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Description |
RD, pFM2 IP
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Data processing |
Alignment: Sequence reads were obtained and mapped to the human hg18 (March, 2006) genomes using ELAND from the Illumina Genome Analyzer Pipeline.
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Submission date |
Nov 17, 2009 |
Last update date |
May 15, 2019 |
Contact name |
Sean Davis |
E-mail(s) |
sdavis2@mail.nih.gov
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Phone |
301-435-2652
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Organization name |
National Cancer Institute
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Lab |
Genetics Branch
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Street address |
37 Convent Drive, Room 6138
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City |
Bethesda |
State/province |
MD |
ZIP/Postal code |
20892 |
Country |
USA |
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Platform ID |
GPL9052 |
Series (1) |
GSE19063 |
Genome-wide map of PAX3-FKHR binding sites in rhabdomyosarcoma |
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Relations |
SRA |
SRX018651 |
BioSample |
SAMN00010769 |
Supplementary file |
Size |
Download |
File type/resource |
GSM471807_1_30G3GAAXX.113_GERALD-2009-09-09.export.txt.gz |
400.6 Mb |
(ftp)(http) |
TXT |
SRA Run Selector |
Processed data provided as supplementary file |
Raw data are available in SRA |
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