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| Status |
Public on Aug 17, 2010 |
| Title |
Rh4 pFM2 IP lane 2 |
| Sample type |
SRA |
| |
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| Source name |
Rh4, pFM2 IP
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| Organism |
Homo sapiens |
| Characteristics |
cell line: Rh4
cell type: rhabdomyosarcoma
pax3-fkhr status: positive
antibody: pFM2
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| Treatment protocol |
None
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| Growth protocol |
RPMI with 10% fetal bovine serum.
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| Extracted molecule |
genomic DNA |
| Extraction protocol |
ChIP-seq
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| Library strategy |
ChIP-Seq |
| Library source |
genomic |
| Library selection |
ChIP |
| Instrument model |
Illumina Genome Analyzer |
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| Description |
pFM2 (8/4/08)_L082008
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| Data processing |
Alignment: Sequence reads were obtained and mapped to the human hg18 (March, 2006) genomes using ELAND from the Illumina Genome Analyzer Pipeline.
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| Submission date |
Nov 17, 2009 |
| Last update date |
May 15, 2019 |
| Contact name |
Sean Davis |
| E-mail(s) |
sdavis2@mail.nih.gov
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| Phone |
301-435-2652
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| Organization name |
National Cancer Institute
|
| Lab |
Genetics Branch
|
| Street address |
37 Convent Drive, Room 6138
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| City |
Bethesda |
| State/province |
MD |
| ZIP/Postal code |
20892 |
| Country |
USA |
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| Platform ID |
GPL9052 |
| Series (1) |
| GSE19063 |
Genome-wide map of PAX3-FKHR binding sites in rhabdomyosarcoma |
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| Relations |
| SRA |
SRX018657 |
| BioSample |
SAMN00010775 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSM471813_8_209A3AAXX.34_GERALD-2009-03-14.export.txt.gz |
449.0 Mb |
(ftp)(http) |
TXT |
SRA Run Selector |
| Processed data provided as supplementary file |
| Raw data are available in SRA |
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