NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM474283 Query DataSets for GSM474283
Status Public on Jan 30, 2010
Title WT1
Sample type RNA
 
Source name WT retina
Organism Mus musculus
Characteristics strain: C57BL/6J
genotype: Ins2/Ins2
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label Cy3
Label protocol Biotinylated cRNA were prepared with the Ambion TotalPrep kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description 4256337042_A
Replicate 1
Data processing The data were normalized using average normalization using BeadStudio software.
 
Submission date Nov 20, 2009
Last update date Nov 20, 2009
Contact name Penn State COM
Organization name Penn State College of Medicine
Department Genome Sciences Facility
Street address 500 University Drive
City Hershey
State/province PA
ZIP/Postal code 17033
Country USA
 
Platform ID GPL6885
Series (1)
GSE19122 Transcriptomic Comparison in the Retinas of Two Mouse Models of Diabetes

Data table header descriptions
ID_REF
VALUE Average normalized signal
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1212607 76.49976 0.02255639
ILMN_1212612 791.7985 0
ILMN_1212619 193.693 0
ILMN_1212628 49.90385 0.4874687
ILMN_1212632 120.2807 0.001253133
ILMN_1212636 1662.112 0
ILMN_1212637 1328.122 0
ILMN_1212645 178.2916 0
ILMN_1212648 308.4443 0
ILMN_1212653 222.3259 0
ILMN_1212672 206.5307 0
ILMN_1212682 64.0836 0.09774436
ILMN_1212683 50.77161 0.4423559
ILMN_1212685 46.16166 0.6704261
ILMN_1212692 51.58867 0.4022556
ILMN_1212693 76.17987 0.02255639
ILMN_1212695 89.27195 0.005012531
ILMN_1212698 44.21834 0.8007519
ILMN_1212702 2343.156 0
ILMN_1212703 113.6397 0.001253133

Total number of rows: 25697

Table truncated, full table size 726 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap