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Sample GSM474284 Query DataSets for GSM474284
Status Public on Jan 30, 2010
Title WT2
Sample type RNA
 
Source name WT retina
Organism Mus musculus
Characteristics strain: C57BL/6J
genotype: Ins2/Ins2
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label Cy3
Label protocol Biotinylated cRNA were prepared with the Ambion TotalPrep kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description 4256337042_B
Replicate 2
Data processing The data were normalized using average normalization using BeadStudio software.
 
Submission date Nov 20, 2009
Last update date Nov 20, 2009
Contact name Penn State COM
Organization name Penn State College of Medicine
Department Genome Sciences Facility
Street address 500 University Drive
City Hershey
State/province PA
ZIP/Postal code 17033
Country USA
 
Platform ID GPL6885
Series (1)
GSE19122 Transcriptomic Comparison in the Retinas of Two Mouse Models of Diabetes

Data table header descriptions
ID_REF
VALUE Average normalized signal
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1212607 97.8409 0.003759399
ILMN_1212612 692.6625 0
ILMN_1212619 172.9128 0
ILMN_1212628 53.62848 0.7719298
ILMN_1212632 130.8109 0.001253133
ILMN_1212636 1516.261 0
ILMN_1212637 1303.367 0
ILMN_1212645 286.3219 0
ILMN_1212648 291.5409 0
ILMN_1212653 210.16 0
ILMN_1212672 164.3663 0
ILMN_1212682 78.74088 0.04010025
ILMN_1212683 57.09005 0.5814536
ILMN_1212685 60.44738 0.4097744
ILMN_1212692 62.31322 0.3258145
ILMN_1212693 78.19226 0.04135338
ILMN_1212695 99.19822 0.003759399
ILMN_1212698 48.21671 0.9736842
ILMN_1212702 2220.715 0
ILMN_1212703 146.0963 0.001253133

Total number of rows: 25697

Table truncated, full table size 732 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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