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Sample GSM474285 Query DataSets for GSM474285
Status Public on Jan 30, 2010
Title WT3
Sample type RNA
 
Source name WT retina
Organism Mus musculus
Characteristics strain: C57BL/6J
genotype: Ins2/Ins2
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label Cy3
Label protocol Biotinylated cRNA were prepared with the Ambion TotalPrep kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description 4256337042_C
Replicate 3
Data processing The data were normalized using average normalization using BeadStudio software.
 
Submission date Nov 20, 2009
Last update date Nov 20, 2009
Contact name Penn State COM
Organization name Penn State College of Medicine
Department Genome Sciences Facility
Street address 500 University Drive
City Hershey
State/province PA
ZIP/Postal code 17033
Country USA
 
Platform ID GPL6885
Series (1)
GSE19122 Transcriptomic Comparison in the Retinas of Two Mouse Models of Diabetes

Data table header descriptions
ID_REF
VALUE Average normalized signal
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1212607 91.01465 0.01002506
ILMN_1212612 677.7451 0
ILMN_1212619 176.8034 0
ILMN_1212628 67.2556 0.197995
ILMN_1212632 107.8802 0.003759399
ILMN_1212636 1489.606 0
ILMN_1212637 1308.807 0
ILMN_1212645 414.1971 0
ILMN_1212648 299.2108 0
ILMN_1212653 192.1715 0
ILMN_1212672 174.2177 0
ILMN_1212682 74.73591 0.07894737
ILMN_1212683 58.59599 0.4962406
ILMN_1212685 59.89745 0.4160401
ILMN_1212692 66.92577 0.2005012
ILMN_1212693 80.75826 0.03759398
ILMN_1212695 86.25085 0.01754386
ILMN_1212698 53.53697 0.7844611
ILMN_1212702 3988.665 0
ILMN_1212703 152.3934 0

Total number of rows: 25697

Table truncated, full table size 725 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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