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Sample GSM474286 Query DataSets for GSM474286
Status Public on Jan 30, 2010
Title WT4
Sample type RNA
 
Source name WT retina
Organism Mus musculus
Characteristics strain: C57BL/6J
genotype: Ins2/Ins2
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label Cy3
Label protocol Biotinylated cRNA were prepared with the Ambion TotalPrep kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description 4256337042_D
Replicate 4
Data processing The data were normalized using average normalization using BeadStudio software.
 
Submission date Nov 20, 2009
Last update date Nov 20, 2009
Contact name Penn State COM
Organization name Penn State College of Medicine
Department Genome Sciences Facility
Street address 500 University Drive
City Hershey
State/province PA
ZIP/Postal code 17033
Country USA
 
Platform ID GPL6885
Series (1)
GSE19122 Transcriptomic Comparison in the Retinas of Two Mouse Models of Diabetes

Data table header descriptions
ID_REF
VALUE Average normalized signal
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1212607 89.26343 0.02631579
ILMN_1212612 615.1181 0
ILMN_1212619 166.3185 0
ILMN_1212628 63.47213 0.39599
ILMN_1212632 107.8902 0.003759399
ILMN_1212636 1555.155 0
ILMN_1212637 1141.684 0
ILMN_1212645 313.2994 0
ILMN_1212648 285.0654 0
ILMN_1212653 207.6656 0
ILMN_1212672 185.6892 0
ILMN_1212682 78.3504 0.07894737
ILMN_1212683 63.01036 0.414787
ILMN_1212685 59.56129 0.5839599
ILMN_1212692 66.81997 0.2819549
ILMN_1212693 80.4026 0.07142857
ILMN_1212695 87.66549 0.03132832
ILMN_1212698 60.79504 0.5075188
ILMN_1212702 2975.712 0
ILMN_1212703 177.6442 0

Total number of rows: 25697

Table truncated, full table size 730 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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