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Sample GSM474287 Query DataSets for GSM474287
Status Public on Jan 30, 2010
Title WT5
Sample type RNA
 
Source name WT retina
Organism Mus musculus
Characteristics strain: C57BL/6J
genotype: Ins2/Ins2
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label Cy3
Label protocol Biotinylated cRNA were prepared with the Ambion TotalPrep kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description 4256337042_E
Replicate 5
Data processing The data were normalized using average normalization using BeadStudio software.
 
Submission date Nov 20, 2009
Last update date Nov 20, 2009
Contact name Penn State COM
Organization name Penn State College of Medicine
Department Genome Sciences Facility
Street address 500 University Drive
City Hershey
State/province PA
ZIP/Postal code 17033
Country USA
 
Platform ID GPL6885
Series (1)
GSE19122 Transcriptomic Comparison in the Retinas of Two Mouse Models of Diabetes

Data table header descriptions
ID_REF
VALUE Average normalized signal
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1212607 82.66411 0.02005013
ILMN_1212612 624.241 0
ILMN_1212619 152.6401 0.001253133
ILMN_1212628 53.80501 0.641604
ILMN_1212632 89.02655 0.0112782
ILMN_1212636 1532.323 0
ILMN_1212637 1505.058 0
ILMN_1212645 376.5277 0
ILMN_1212648 324.7461 0
ILMN_1212653 158.8081 0.001253133
ILMN_1212672 166.6689 0
ILMN_1212682 72.64341 0.06390978
ILMN_1212683 49.84807 0.8571429
ILMN_1212685 51.04353 0.7882205
ILMN_1212692 61.35936 0.2706767
ILMN_1212693 75.86131 0.04260652
ILMN_1212695 84.46959 0.01503759
ILMN_1212698 50.91188 0.7932331
ILMN_1212702 1209.747 0
ILMN_1212703 107.7605 0.001253133

Total number of rows: 25697

Table truncated, full table size 738 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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