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Sample GSM474288 Query DataSets for GSM474288
Status Public on Jan 30, 2010
Title WT6
Sample type RNA
 
Source name WT retina
Organism Mus musculus
Characteristics strain: C57BL/6J
genotype: Ins2/Ins2
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label Cy3
Label protocol Biotinylated cRNA were prepared with the Ambion TotalPrep kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description 4256337042_F
Replicate 6
Data processing The data were normalized using average normalization using BeadStudio software.
 
Submission date Nov 20, 2009
Last update date Nov 20, 2009
Contact name Penn State COM
Organization name Penn State College of Medicine
Department Genome Sciences Facility
Street address 500 University Drive
City Hershey
State/province PA
ZIP/Postal code 17033
Country USA
 
Platform ID GPL6885
Series (1)
GSE19122 Transcriptomic Comparison in the Retinas of Two Mouse Models of Diabetes

Data table header descriptions
ID_REF
VALUE Average normalized signal
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1212607 86.76541 0.0112782
ILMN_1212612 546.2044 0
ILMN_1212619 154.9181 0
ILMN_1212628 61.99063 0.3320802
ILMN_1212632 98.46369 0.005012531
ILMN_1212636 1428.146 0
ILMN_1212637 1346.37 0
ILMN_1212645 120.528 0.001253133
ILMN_1212648 314.3804 0
ILMN_1212653 202.7786 0
ILMN_1212672 144.3994 0
ILMN_1212682 92.35727 0.00877193
ILMN_1212683 55.61038 0.6215539
ILMN_1212685 57.16245 0.547619
ILMN_1212692 62.91306 0.3057644
ILMN_1212693 82.22647 0.01879699
ILMN_1212695 83.30471 0.01754386
ILMN_1212698 53.17491 0.7468672
ILMN_1212702 2544.631 0
ILMN_1212703 163.2089 0

Total number of rows: 25697

Table truncated, full table size 725 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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