GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM474289 Query DataSets for GSM474289
Status Public on Jan 30, 2010
Title WT7
Sample type RNA
Source name WT retina
Organism Mus musculus
Characteristics strain: C57BL/6J
genotype: Ins2/Ins2
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label Cy3
Label protocol Biotinylated cRNA were prepared with the Ambion TotalPrep kit for Illumina arrays
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description 4256337042_G
Replicate 7
Data processing The data were normalized using average normalization using BeadStudio software.
Submission date Nov 20, 2009
Last update date Nov 20, 2009
Contact name Penn State COM
Organization name Penn State College of Medicine
Department Genome Sciences Facility
Street address 500 University Drive
City Hershey
State/province PA
ZIP/Postal code 17033
Country USA
Platform ID GPL6885
Series (1)
GSE19122 Transcriptomic Comparison in the Retinas of Two Mouse Models of Diabetes

Data table header descriptions
VALUE Average normalized signal
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1212607 88.64563 0.01754386
ILMN_1212612 603.2159 0
ILMN_1212619 172.0798 0
ILMN_1212628 60.79686 0.4661654
ILMN_1212632 107.0318 0.006265664
ILMN_1212636 1414.198 0
ILMN_1212637 1239.126 0
ILMN_1212645 462.3893 0
ILMN_1212648 371.3236 0
ILMN_1212653 198.1127 0
ILMN_1212672 158.4125 0
ILMN_1212682 95.37781 0.0112782
ILMN_1212683 58.48751 0.5739349
ILMN_1212685 55.07116 0.7731829
ILMN_1212692 72.23742 0.1253133
ILMN_1212693 96.36766 0.01002506
ILMN_1212695 79.69576 0.05513784
ILMN_1212698 59.02895 0.5488722
ILMN_1212702 3783.639 0
ILMN_1212703 201.2992 0

Total number of rows: 25697

Table truncated, full table size 725 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap