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Sample GSM474290 Query DataSets for GSM474290
Status Public on Jan 30, 2010
Title WT8
Sample type RNA
Source name WT retina
Organism Mus musculus
Characteristics strain: C57BL/6J
genotype: Ins2/Ins2
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label Cy3
Label protocol Biotinylated cRNA were prepared with the Ambion TotalPrep kit for Illumina arrays
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description 4256337042_H
Replicate 8
Data processing The data were normalized using average normalization using BeadStudio software.
Submission date Nov 20, 2009
Last update date Nov 20, 2009
Contact name Penn State COM
Organization name Penn State College of Medicine
Department Genome Sciences Facility
Street address 500 University Drive
City Hershey
State/province PA
ZIP/Postal code 17033
Country USA
Platform ID GPL6885
Series (1)
GSE19122 Transcriptomic Comparison in the Retinas of Two Mouse Models of Diabetes

Data table header descriptions
VALUE Average normalized signal
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1212607 83.23907 0.00877193
ILMN_1212612 758.1847 0
ILMN_1212619 159.3182 0
ILMN_1212628 47.99569 0.5802005
ILMN_1212632 90.94714 0.006265664
ILMN_1212636 1450.661 0
ILMN_1212637 1276.696 0
ILMN_1212645 206.1193 0
ILMN_1212648 332.155 0
ILMN_1212653 218.6342 0
ILMN_1212672 181.8268 0
ILMN_1212682 82.13229 0.01002506
ILMN_1212683 45.2392 0.7581454
ILMN_1212685 42.98179 0.8847118
ILMN_1212692 57.61478 0.1729323
ILMN_1212693 66.34109 0.06641604
ILMN_1212695 69.24113 0.04135338
ILMN_1212698 40.23534 0.9636592
ILMN_1212702 5153.011 0
ILMN_1212703 156.8337 0

Total number of rows: 25697

Table truncated, full table size 716 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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