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Sample GSM474291 Query DataSets for GSM474291
Status Public on Jan 30, 2010
Title Ins2Akita1
Sample type RNA
Source name Ins2Akita retina
Organism Mus musculus
Characteristics strain: C57BL/6J
genotype: Ins2Akita/Ins2
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label Cy3
Label protocol Biotinylated cRNA were prepared with the Ambion TotalPrep kit for Illumina arrays
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description 4256337088_A
Replicate 1
Data processing The data were normalized using average normalization using BeadStudio software.
Submission date Nov 20, 2009
Last update date Nov 20, 2009
Contact name Penn State COM
Organization name Penn State College of Medicine
Department Genome Sciences Facility
Street address 500 University Drive
City Hershey
State/province PA
ZIP/Postal code 17033
Country USA
Platform ID GPL6885
Series (1)
GSE19122 Transcriptomic Comparison in the Retinas of Two Mouse Models of Diabetes

Data table header descriptions
VALUE Average normalized signal
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1212607 63.75459 0.07017544
ILMN_1212612 568.9966 0
ILMN_1212619 189.4523 0
ILMN_1212628 49.50158 0.3634085
ILMN_1212632 108.6672 0.001253133
ILMN_1212636 1255.027 0
ILMN_1212637 1151.797 0
ILMN_1212645 586.5036 0
ILMN_1212648 325.8261 0
ILMN_1212653 195.7504 0
ILMN_1212672 126.3373 0.001253133
ILMN_1212682 58.36563 0.1165414
ILMN_1212683 47.9126 0.4235589
ILMN_1212685 48.10074 0.4185464
ILMN_1212692 64.94022 0.06390978
ILMN_1212693 86.39866 0.005012531
ILMN_1212695 70.45623 0.03258145
ILMN_1212698 44.09188 0.6516291
ILMN_1212702 3564.315 0
ILMN_1212703 156.3859 0

Total number of rows: 25697

Table truncated, full table size 726 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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