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Sample GSM474292 Query DataSets for GSM474292
Status Public on Jan 30, 2010
Title Ins2Akita2
Sample type RNA
Source name Ins2Akita retina
Organism Mus musculus
Characteristics strain: C57BL/6J
genotype: Ins2Akita/Ins2
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label Cy3
Label protocol Biotinylated cRNA were prepared with the Ambion TotalPrep kit for Illumina arrays
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description 4256337088_B
Replicate 2
Data processing The data were normalized using average normalization using BeadStudio software.
Submission date Nov 20, 2009
Last update date Nov 20, 2009
Contact name Penn State COM
Organization name Penn State College of Medicine
Department Genome Sciences Facility
Street address 500 University Drive
City Hershey
State/province PA
ZIP/Postal code 17033
Country USA
Platform ID GPL6885
Series (1)
GSE19122 Transcriptomic Comparison in the Retinas of Two Mouse Models of Diabetes

Data table header descriptions
VALUE Average normalized signal
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1212607 70.77949 0.01879699
ILMN_1212612 722.5512 0
ILMN_1212619 175.1237 0
ILMN_1212628 46.32625 0.4586466
ILMN_1212632 82.62034 0.003759399
ILMN_1212636 1249.505 0
ILMN_1212637 1179.523 0
ILMN_1212645 148.5779 0
ILMN_1212648 292.5952 0
ILMN_1212653 178.1706 0
ILMN_1212672 163.9841 0
ILMN_1212682 70.19176 0.02005013
ILMN_1212683 45.28159 0.5338346
ILMN_1212685 44.74878 0.566416
ILMN_1212692 56.91109 0.122807
ILMN_1212693 66.93439 0.03132832
ILMN_1212695 71.04381 0.01629073
ILMN_1212698 41.4301 0.7857143
ILMN_1212702 1145.756 0
ILMN_1212703 141.2393 0.001253133

Total number of rows: 25697

Table truncated, full table size 735 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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