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Sample GSM474293 Query DataSets for GSM474293
Status Public on Jan 30, 2010
Title Ins2Akita3
Sample type RNA
Source name Ins2Akita retina
Organism Mus musculus
Characteristics strain: C57BL/6J
genotype: Ins2Akita/Ins2
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label Cy3
Label protocol Biotinylated cRNA were prepared with the Ambion TotalPrep kit for Illumina arrays
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description 4256337088_C
Replicate 3
Data processing The data were normalized using average normalization using BeadStudio software.
Submission date Nov 20, 2009
Last update date Nov 20, 2009
Contact name Penn State COM
Organization name Penn State College of Medicine
Department Genome Sciences Facility
Street address 500 University Drive
City Hershey
State/province PA
ZIP/Postal code 17033
Country USA
Platform ID GPL6885
Series (1)
GSE19122 Transcriptomic Comparison in the Retinas of Two Mouse Models of Diabetes

Data table header descriptions
VALUE Average normalized signal
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1212607 68.0072 0.05137845
ILMN_1212612 722.1352 0
ILMN_1212619 170.1971 0
ILMN_1212628 42.74451 0.8471178
ILMN_1212632 91.96096 0.006265664
ILMN_1212636 1312.399 0
ILMN_1212637 1178.463 0
ILMN_1212645 366.2892 0
ILMN_1212648 310.8277 0
ILMN_1212653 180.0224 0
ILMN_1212672 144.5762 0.001253133
ILMN_1212682 74.23026 0.03007519
ILMN_1212683 44.19857 0.7543859
ILMN_1212685 46.96011 0.5776942
ILMN_1212692 64.25839 0.07393484
ILMN_1212693 71.08737 0.03759398
ILMN_1212695 89.36709 0.006265664
ILMN_1212698 42.67131 0.8508772
ILMN_1212702 1201.621 0
ILMN_1212703 146.4134 0.001253133

Total number of rows: 25697

Table truncated, full table size 739 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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