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Sample GSM474295 Query DataSets for GSM474295
Status Public on Jan 30, 2010
Title Ins2Akita5
Sample type RNA
Source name Ins2Akita retina
Organism Mus musculus
Characteristics strain: C57BL/6J
genotype: Ins2Akita/Ins2
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label Cy3
Label protocol Biotinylated cRNA were prepared with the Ambion TotalPrep kit for Illumina arrays
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description 4256337088_E
Replicate 5
Data processing The data were normalized using average normalization using BeadStudio software.
Submission date Nov 20, 2009
Last update date Nov 20, 2009
Contact name Penn State COM
Organization name Penn State College of Medicine
Department Genome Sciences Facility
Street address 500 University Drive
City Hershey
State/province PA
ZIP/Postal code 17033
Country USA
Platform ID GPL6885
Series (1)
GSE19122 Transcriptomic Comparison in the Retinas of Two Mouse Models of Diabetes

Data table header descriptions
VALUE Average normalized signal
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1212607 75.49724 0.02506266
ILMN_1212612 656.2561 0
ILMN_1212619 162.9087 0
ILMN_1212628 56.87946 0.2606516
ILMN_1212632 103.9856 0.001253133
ILMN_1212636 1292.219 0
ILMN_1212637 1063.114 0
ILMN_1212645 450.8452 0
ILMN_1212648 329.0927 0
ILMN_1212653 205.2127 0
ILMN_1212672 135.3851 0.001253133
ILMN_1212682 63.31263 0.1190476
ILMN_1212683 47.30337 0.7731829
ILMN_1212685 48.4001 0.6992481
ILMN_1212692 59.51423 0.1829574
ILMN_1212693 80.3893 0.01629073
ILMN_1212695 94.45776 0.002506266
ILMN_1212698 43.26032 0.9548872
ILMN_1212702 2267.749 0
ILMN_1212703 169.4949 0

Total number of rows: 25697

Table truncated, full table size 738 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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