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Sample GSM474297 Query DataSets for GSM474297
Status Public on Jan 30, 2010
Title Ins2Akita7
Sample type RNA
Source name Ins2Akita retina
Organism Mus musculus
Characteristics strain: C57BL/6J
genotype: Ins2Akita/Ins2
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label Cy3
Label protocol Biotinylated cRNA were prepared with the Ambion TotalPrep kit for Illumina arrays
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description 4256337088_G
Replicate 7
Data processing The data were normalized using average normalization using BeadStudio software.
Submission date Nov 20, 2009
Last update date Nov 20, 2009
Contact name Penn State COM
Organization name Penn State College of Medicine
Department Genome Sciences Facility
Street address 500 University Drive
City Hershey
State/province PA
ZIP/Postal code 17033
Country USA
Platform ID GPL6885
Series (1)
GSE19122 Transcriptomic Comparison in the Retinas of Two Mouse Models of Diabetes

Data table header descriptions
VALUE Average normalized signal
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1212607 77.62746 0.02380952
ILMN_1212612 661.9216 0
ILMN_1212619 177.4397 0
ILMN_1212628 50.538 0.5225564
ILMN_1212632 101.9634 0.001253133
ILMN_1212636 1378.983 0
ILMN_1212637 1181.724 0
ILMN_1212645 387.951 0
ILMN_1212648 343.2497 0
ILMN_1212653 179.2814 0
ILMN_1212672 155.4873 0.001253133
ILMN_1212682 67.33869 0.07393484
ILMN_1212683 52.38759 0.4323308
ILMN_1212685 54.7312 0.320802
ILMN_1212692 61.89788 0.1253133
ILMN_1212693 76.92727 0.02380952
ILMN_1212695 93.60871 0.005012531
ILMN_1212698 48.77011 0.6278195
ILMN_1212702 1850.216 0
ILMN_1212703 189.9873 0

Total number of rows: 25697

Table truncated, full table size 737 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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