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Sample GSM474298 Query DataSets for GSM474298
Status Public on Jan 30, 2010
Title Ins2Akita8
Sample type RNA
Source name Ins2Akita retina
Organism Mus musculus
Characteristics strain: C57BL/6J
genotype: Ins2Akita/Ins2
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label Cy3
Label protocol Biotinylated cRNA were prepared with the Ambion TotalPrep kit for Illumina arrays
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description 4256337088_H
Replicate 8
Data processing The data were normalized using average normalization using BeadStudio software.
Submission date Nov 20, 2009
Last update date Nov 20, 2009
Contact name Penn State COM
Organization name Penn State College of Medicine
Department Genome Sciences Facility
Street address 500 University Drive
City Hershey
State/province PA
ZIP/Postal code 17033
Country USA
Platform ID GPL6885
Series (1)
GSE19122 Transcriptomic Comparison in the Retinas of Two Mouse Models of Diabetes

Data table header descriptions
VALUE Average normalized signal
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1212607 75.42545 0.0112782
ILMN_1212612 801.3562 0
ILMN_1212619 146.4628 0.001253133
ILMN_1212628 46.19282 0.406015
ILMN_1212632 88.33224 0.002506266
ILMN_1212636 1344.485 0
ILMN_1212637 1201.872 0
ILMN_1212645 512.9001 0
ILMN_1212648 365.4459 0
ILMN_1212653 166.2084 0
ILMN_1212672 170.1246 0
ILMN_1212682 70.85339 0.01503759
ILMN_1212683 43.79235 0.5488722
ILMN_1212685 54.45932 0.1365915
ILMN_1212692 61.00624 0.06015038
ILMN_1212693 67.98784 0.02255639
ILMN_1212695 84.27967 0.003759399
ILMN_1212698 39.41963 0.8571429
ILMN_1212702 3191.986 0
ILMN_1212703 133.8376 0.001253133

Total number of rows: 25697

Table truncated, full table size 737 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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