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Sample GSM474299 Query DataSets for GSM474299
Status Public on Jan 30, 2010
Title Ins2Akita9
Sample type RNA
Source name Ins2Akita retina
Organism Mus musculus
Characteristics strain: C57BL/6J
genotype: Ins2Akita/Ins2
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label Cy3
Label protocol Biotinylated cRNA were prepared with the Ambion TotalPrep kit for Illumina arrays
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description 4256337002_H
Replicate 9
Data processing The data were normalized using average normalization using BeadStudio software.
Submission date Nov 20, 2009
Last update date Nov 20, 2009
Contact name Penn State COM
Organization name Penn State College of Medicine
Department Genome Sciences Facility
Street address 500 University Drive
City Hershey
State/province PA
ZIP/Postal code 17033
Country USA
Platform ID GPL6885
Series (1)
GSE19122 Transcriptomic Comparison in the Retinas of Two Mouse Models of Diabetes

Data table header descriptions
VALUE Average normalized signal
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1212607 92.13854 0.007518797
ILMN_1212612 743.8702 0
ILMN_1212619 180.1025 0
ILMN_1212628 46.65669 0.5952381
ILMN_1212632 102.8042 0.002506266
ILMN_1212636 1564.626 0
ILMN_1212637 1435.737 0
ILMN_1212645 527.7787 0
ILMN_1212648 358.9239 0
ILMN_1212653 187.9222 0
ILMN_1212672 141.3484 0
ILMN_1212682 73.9183 0.03634085
ILMN_1212683 47.78071 0.5401003
ILMN_1212685 53.71877 0.2932331
ILMN_1212692 56.79556 0.2205514
ILMN_1212693 64.8837 0.09398496
ILMN_1212695 69.43562 0.0651629
ILMN_1212698 39.30237 0.9586466
ILMN_1212702 1798.996 0
ILMN_1212703 135.1794 0

Total number of rows: 25697

Table truncated, full table size 718 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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