NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM474300 Query DataSets for GSM474300
Status Public on Jan 30, 2010
Title Control1
Sample type RNA
 
Source name Un-treated retina
Organism Mus musculus
Characteristics strain: C57BL/6J
treatment: control
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label Cy3
Label protocol Biotinylated cRNA were prepared with the Ambion TotalPrep kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description 4256337010_A
Replicate 1
Data processing The data were normalized using average normalization using BeadStudio software.
 
Submission date Nov 20, 2009
Last update date Nov 20, 2009
Contact name Penn State COM
Organization name Penn State College of Medicine
Department Genome Sciences Facility
Street address 500 University Drive
City Hershey
State/province PA
ZIP/Postal code 17033
Country USA
 
Platform ID GPL6885
Series (1)
GSE19122 Transcriptomic Comparison in the Retinas of Two Mouse Models of Diabetes

Data table header descriptions
ID_REF
VALUE Average normalized signal
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1212607 90.3084 0.02255639
ILMN_1212612 613.8438 0
ILMN_1212619 168.2266 0.001253133
ILMN_1212628 52.12941 0.8609022
ILMN_1212632 89.6957 0.02380952
ILMN_1212636 1089.236 0
ILMN_1212637 1258.458 0
ILMN_1212645 423.9528 0
ILMN_1212648 296.0049 0
ILMN_1212653 186.3802 0
ILMN_1212672 174.9113 0
ILMN_1212682 89.17377 0.02380952
ILMN_1212683 48.04794 0.9749373
ILMN_1212685 62.43441 0.3784461
ILMN_1212692 70.96871 0.1704261
ILMN_1212693 84.42559 0.04887218
ILMN_1212695 109.1997 0.003759399
ILMN_1212698 54.46621 0.7493734
ILMN_1212702 12307.05 0
ILMN_1212703 179.7706 0

Total number of rows: 25697

Table truncated, full table size 738 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap