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Sample GSM474301 Query DataSets for GSM474301
Status Public on Jan 30, 2010
Title Control2
Sample type RNA
 
Source name Un-treated retina
Organism Mus musculus
Characteristics strain: C57BL/6J
treatment: control
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label Cy3
Label protocol Biotinylated cRNA were prepared with the Ambion TotalPrep kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description 4256337010_B
Replicate 2
Data processing The data were normalized using average normalization using BeadStudio software.
 
Submission date Nov 20, 2009
Last update date Nov 20, 2009
Contact name Penn State COM
Organization name Penn State College of Medicine
Department Genome Sciences Facility
Street address 500 University Drive
City Hershey
State/province PA
ZIP/Postal code 17033
Country USA
 
Platform ID GPL6885
Series (1)
GSE19122 Transcriptomic Comparison in the Retinas of Two Mouse Models of Diabetes

Data table header descriptions
ID_REF
VALUE Average normalized signal
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1212607 92.85466 0.01253133
ILMN_1212612 676.879 0
ILMN_1212619 186.7133 0
ILMN_1212628 57.40732 0.302005
ILMN_1212632 98.5184 0.002506266
ILMN_1212636 1264.363 0
ILMN_1212637 1310.653 0
ILMN_1212645 103.3462 0.002506266
ILMN_1212648 316.8001 0
ILMN_1212653 162.3138 0
ILMN_1212672 156.2225 0
ILMN_1212682 76.83659 0.03884712
ILMN_1212683 43.49614 0.9536341
ILMN_1212685 51.51084 0.5614035
ILMN_1212692 61.36392 0.197995
ILMN_1212693 57.69667 0.2869674
ILMN_1212695 95.76024 0.007518797
ILMN_1212698 51.68713 0.5526316
ILMN_1212702 1541.773 0
ILMN_1212703 123.54 0.001253133

Total number of rows: 25697

Table truncated, full table size 731 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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