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Sample GSM474302 Query DataSets for GSM474302
Status Public on Jan 30, 2010
Title Control3
Sample type RNA
Source name Un-treated retina
Organism Mus musculus
Characteristics strain: C57BL/6J
treatment: control
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label Cy3
Label protocol Biotinylated cRNA were prepared with the Ambion TotalPrep kit for Illumina arrays
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description 4256337010_C
Replicate 3
Data processing The data were normalized using average normalization using BeadStudio software.
Submission date Nov 20, 2009
Last update date Nov 20, 2009
Contact name Penn State COM
Organization name Penn State College of Medicine
Department Genome Sciences Facility
Street address 500 University Drive
City Hershey
State/province PA
ZIP/Postal code 17033
Country USA
Platform ID GPL6885
Series (1)
GSE19122 Transcriptomic Comparison in the Retinas of Two Mouse Models of Diabetes

Data table header descriptions
VALUE Average normalized signal
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1212607 71.96698 0.0651629
ILMN_1212612 610.4996 0
ILMN_1212619 145.1615 0
ILMN_1212628 49.9475 0.5401003
ILMN_1212632 83.10814 0.02005013
ILMN_1212636 1241.729 0
ILMN_1212637 1601.354 0
ILMN_1212645 337.3888 0
ILMN_1212648 300.3302 0
ILMN_1212653 187.9842 0
ILMN_1212672 161.0756 0
ILMN_1212682 72.5402 0.06015038
ILMN_1212683 52.30538 0.4210526
ILMN_1212685 47.37546 0.6879699
ILMN_1212692 65.43864 0.1090226
ILMN_1212693 74.51344 0.04260652
ILMN_1212695 91.72213 0.00877193
ILMN_1212698 43.57565 0.8984963
ILMN_1212702 4886.854 0
ILMN_1212703 114.4866 0.001253133

Total number of rows: 25697

Table truncated, full table size 727 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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