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Sample GSM474304 Query DataSets for GSM474304
Status Public on Jan 30, 2010
Title Control5
Sample type RNA
Source name Un-treated retina
Organism Mus musculus
Characteristics strain: C57BL/6J
treatment: control
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label Cy3
Label protocol Biotinylated cRNA were prepared with the Ambion TotalPrep kit for Illumina arrays
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description 4256337010_E
Replicate 5
Data processing The data were normalized using average normalization using BeadStudio software.
Submission date Nov 20, 2009
Last update date Nov 20, 2009
Contact name Penn State COM
Organization name Penn State College of Medicine
Department Genome Sciences Facility
Street address 500 University Drive
City Hershey
State/province PA
ZIP/Postal code 17033
Country USA
Platform ID GPL6885
Series (1)
GSE19122 Transcriptomic Comparison in the Retinas of Two Mouse Models of Diabetes

Data table header descriptions
VALUE Average normalized signal
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1212607 78.88818 0.06015038
ILMN_1212612 659.8494 0
ILMN_1212619 171.9659 0
ILMN_1212628 55.96999 0.3696742
ILMN_1212632 76.47387 0.07017544
ILMN_1212636 1283.045 0
ILMN_1212637 1705.293 0
ILMN_1212645 320.8348 0
ILMN_1212648 338.9671 0
ILMN_1212653 173.224 0
ILMN_1212672 166.3084 0
ILMN_1212682 82.21734 0.04636591
ILMN_1212683 50.27195 0.6403509
ILMN_1212685 52.82166 0.5125313
ILMN_1212692 62.41998 0.1992481
ILMN_1212693 77.85455 0.06390978
ILMN_1212695 91.21054 0.02506266
ILMN_1212698 46.97913 0.8308271
ILMN_1212702 3459.713 0
ILMN_1212703 119.9431 0.001253133

Total number of rows: 25697

Table truncated, full table size 725 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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