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Sample GSM474305 Query DataSets for GSM474305
Status Public on Jan 30, 2010
Title Control6
Sample type RNA
Source name Un-treated retina
Organism Mus musculus
Characteristics strain: C57BL/6J
treatment: control
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label Cy3
Label protocol Biotinylated cRNA were prepared with the Ambion TotalPrep kit for Illumina arrays
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description 4256337010_F
Replicate 6
Data processing The data were normalized using average normalization using BeadStudio software.
Submission date Nov 20, 2009
Last update date Nov 20, 2009
Contact name Penn State COM
Organization name Penn State College of Medicine
Department Genome Sciences Facility
Street address 500 University Drive
City Hershey
State/province PA
ZIP/Postal code 17033
Country USA
Platform ID GPL6885
Series (1)
GSE19122 Transcriptomic Comparison in the Retinas of Two Mouse Models of Diabetes

Data table header descriptions
VALUE Average normalized signal
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1212607 73.5555 0.0764411
ILMN_1212612 695.2364 0
ILMN_1212619 159.2407 0
ILMN_1212628 56.51857 0.3283208
ILMN_1212632 98.98427 0.00877193
ILMN_1212636 1182.336 0
ILMN_1212637 1513.265 0
ILMN_1212645 175.2567 0
ILMN_1212648 291.0948 0
ILMN_1212653 193.0412 0
ILMN_1212672 170.5571 0
ILMN_1212682 83.65707 0.02506266
ILMN_1212683 46.98606 0.7869674
ILMN_1212685 51.65707 0.5313283
ILMN_1212692 60.05506 0.2406015
ILMN_1212693 69.07145 0.1065163
ILMN_1212695 97.32509 0.00877193
ILMN_1212698 48.60563 0.6892231
ILMN_1212702 2493.66 0
ILMN_1212703 142.9534 0

Total number of rows: 25697

Table truncated, full table size 723 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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