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Sample GSM474306 Query DataSets for GSM474306
Status Public on Jan 30, 2010
Title Control7
Sample type RNA
 
Source name Un-treated retina
Organism Mus musculus
Characteristics strain: C57BL/6J
treatment: control
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label Cy3
Label protocol Biotinylated cRNA were prepared with the Ambion TotalPrep kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description 4256337010_G
Replicate 7
Data processing The data were normalized using average normalization using BeadStudio software.
 
Submission date Nov 20, 2009
Last update date Nov 20, 2009
Contact name Penn State COM
Organization name Penn State College of Medicine
Department Genome Sciences Facility
Street address 500 University Drive
City Hershey
State/province PA
ZIP/Postal code 17033
Country USA
 
Platform ID GPL6885
Series (1)
GSE19122 Transcriptomic Comparison in the Retinas of Two Mouse Models of Diabetes

Data table header descriptions
ID_REF
VALUE Average normalized signal
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1212607 83.70332 0.02882206
ILMN_1212612 621.4557 0
ILMN_1212619 160.5938 0
ILMN_1212628 59.10353 0.3859649
ILMN_1212632 102.2837 0.002506266
ILMN_1212636 1198.164 0
ILMN_1212637 1378.082 0
ILMN_1212645 559.2791 0
ILMN_1212648 332.65 0
ILMN_1212653 195.4534 0
ILMN_1212672 168.6247 0
ILMN_1212682 73.70952 0.0839599
ILMN_1212683 57.3826 0.4536341
ILMN_1212685 49.18201 0.8421053
ILMN_1212692 74.24518 0.0839599
ILMN_1212693 82.48642 0.03258145
ILMN_1212695 103.729 0.002506266
ILMN_1212698 42.82724 0.9924812
ILMN_1212702 3444.555 0
ILMN_1212703 152.2591 0

Total number of rows: 25697

Table truncated, full table size 723 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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