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Sample GSM474307 Query DataSets for GSM474307
Status Public on Jan 30, 2010
Title Control8
Sample type RNA
 
Source name Un-treated retina
Organism Mus musculus
Characteristics strain: C57BL/6J
treatment: control
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label Cy3
Label protocol Biotinylated cRNA were prepared with the Ambion TotalPrep kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description 4256337010_H
Replicate 8
Data processing The data were normalized using average normalization using BeadStudio software.
 
Submission date Nov 20, 2009
Last update date Nov 20, 2009
Contact name Penn State COM
Organization name Penn State College of Medicine
Department Genome Sciences Facility
Street address 500 University Drive
City Hershey
State/province PA
ZIP/Postal code 17033
Country USA
 
Platform ID GPL6885
Series (1)
GSE19122 Transcriptomic Comparison in the Retinas of Two Mouse Models of Diabetes

Data table header descriptions
ID_REF
VALUE Average normalized signal
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1212607 86.8996 0.01378446
ILMN_1212612 690.492 0
ILMN_1212619 151.3499 0
ILMN_1212628 52.26722 0.4586466
ILMN_1212632 104.4809 0.005012531
ILMN_1212636 1333.093 0
ILMN_1212637 1687.82 0
ILMN_1212645 226.9647 0
ILMN_1212648 319.9996 0
ILMN_1212653 158.6055 0
ILMN_1212672 183.9017 0
ILMN_1212682 77.69448 0.02882206
ILMN_1212683 52.85184 0.4398496
ILMN_1212685 50.5729 0.5401003
ILMN_1212692 62.29441 0.1566416
ILMN_1212693 67.38635 0.1052632
ILMN_1212695 97.24495 0.006265664
ILMN_1212698 45.8826 0.7932331
ILMN_1212702 1985.455 0
ILMN_1212703 129.6723 0

Total number of rows: 25697

Table truncated, full table size 717 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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